Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00244 ATGGATTCTTTAGAGTTAGGGAACACCGATTCTTGGGATTTCCTCGATTACTCATTCATCGACCCTCCCCCCACCGATTTCCTCTGGTCCAATCCAAGTGATTTTGCGAGTGTGAACACGGAAATTGACATTCGAAGCAGTGATTTTGCAAGTGTGAGTGCGGAAATTGATATTCCAAGTGGTGTTGTTGTGTGTCAAGAAGAGAATACCAGGAAGAGGGGACGCGCTGAATCATGCCACAAGGCAGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGAGAAAAACTCAATGAAAGGTTTTGTGATTTGAGTGCTGTTTTGGATCCCGGGAGACCTGTGAGAACCGATAAGCCTGCTATACTTGACGATGCTATCAGAGTCTTGAACCAACTTAAAACTGAAGCTGAGGAACTCAAAGAAACAAATGAAAAACTGTTGGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTTCGCGAAGAGAAGCTTGTTCTGAAAGCTGATAAAGAAAAGATGGAGAAACAGCTGAAAACTTTGCCTATTCCACCAGCAGGATTTATGCCTCCTCCTCCTATGGCTGCTTATCAAGCACGGGTGAACAAGATGGCTGTTTACCCAAACTATGGATATATCCCAATGTGGCAATATCTTCCTCAATCAGTTCGCGATACATCCCAAGATCATGAGCTCAGGCCTCCTGCTGCATAG 711 0.4388 MDSLELGNTDSWDFLDYSFIDPPPTDFLWSNPSDFASVNTEIDIRSSDFASVSAEIDIPSGVVVCQEENTRKRGRAESCHKAGTKACREKLRREKLNERFCDLSAVLDPGRPVRTDKPAILDDAIRVLNQLKTEAEELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKMEKQLKTLPIPPAGFMPPPPMAAYQARVNKMAVYPNYGYIPMWQYLPQSVRDTSQDHELRPPAA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00244 236 CDD bHLH_AtILR3_like 85 160 - -
Vifa3g00244 236 Gene3D - 83 162 IPR036638 GO:0046983
Vifa3g00244 236 PANTHER BHLH TRANSCRIPTION FACTOR 8 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vifa3g00244 236 FunFam Transcription factor bHLH104 83 164 - -
Vifa3g00244 236 Coils Coil 121 176 - -
Vifa3g00244 236 SMART finulus 86 137 IPR011598 GO:0046983
Vifa3g00244 236 Pfam Helix-loop-helix DNA-binding domain 84 131 IPR011598 GO:0046983
Vifa3g00244 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 80 131 IPR011598 GO:0046983
Vifa3g00244 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00244 Vifa-Chr3 23650279 23653058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00244 70 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 72.024 1.27e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g00244 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00244 - - mtr:11419849 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00244 3 23650279 23653058 Vifa3g00244 3 23650279 23653058 ECH