Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00243 ATGGCTTATTCCTCCAATTTCTTTTCACAAGATTCATTCTCTTTGAATCCCAAAACGCACCACGAGTTTCTCCCCTTCAACGAAAACGACCCAGAAGAGATGCTTTTATACGGCATGATAACATCATCATCACAACAACAACAACAACAAAAACACAAACTAATCCCTAGTAGCAAAGAAACAACAACAAAGAGCAACAAGTCCTACCGCGGCGTCCGACGGAGACCGTGGGGGAAATTCGCGGCGGAGATAAGAGATTCAACTCGGCATGGCATAAGGGTCTGGCTTGGAACATTTGATAGTGCGGAAGCAGCCGCACTAGCTTATGATCAAGCTGCTTTTTCGATGAGAGGTTCCGCCGCAATACTTAATTTTCCGGTTGAGAAGGTTAGGGAATCGCTTAGGGATATGAATTATGTGGTGTCTAGTGATGATCAGTGTTCGCCGGTTGTTGCTTTGAAGAGAAAGCATTCGATGAGAAGGAAAATGGATGAGAAGAAGAAGAAACATGAGAGAGATGTTGTTGGGATAGATAATTTGGTTGTGTTTGAAGATCTTGGTTCTGAATATTTGGAACAGTTGTTGATGTCTTATTGTTGA 600 0.4267 MAYSSNFFSQDSFSLNPKTHHEFLPFNENDPEEMLLYGMITSSSQQQQQQKHKLIPSSKETTTKSNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVEKVRESLRDMNYVVSSDDQCSPVVALKRKHSMRRKMDEKKKKHERDVVGIDNLVVFEDLGSEYLEQLLMSYC 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00243 199 MobiDBLite consensus disorder prediction 46 70 - -
Vifa3g00243 199 FunFam Ethylene-responsive transcription factor 2 67 128 - -
Vifa3g00243 199 CDD AP2 67 127 IPR001471 GO:0003700|GO:0006355
Vifa3g00243 199 PANTHER DNA-BINDING DOMAIN 46 194 IPR044808 GO:0003700|GO:0009873
Vifa3g00243 199 SUPERFAMILY DNA-binding domain 68 128 IPR016177 GO:0003677
Vifa3g00243 199 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Vifa3g00243 199 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Vifa3g00243 199 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Vifa3g00243 199 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Vifa3g00243 199 Gene3D AP2/ERF domain 67 128 IPR036955 GO:0003700|GO:0006355
Vifa3g00243 199 MobiDBLite consensus disorder prediction 46 65 - -
Vifa3g00243 199 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00243 Vifa-Chr3 22961504 22962103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00243 24 197 AP2-EREBP Transcription Factor Family AT3G23240 65.730 2.05e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g00243 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00243 K14516 - qsu:111996147 239.58