Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00238 ATGGCAGATCCAGATAGTTATGGCAATCCTGAACGTGATATTGAACAAGCATTCCTTACTTTAAAAAGAGGAACTCAGTTAGTTAAGTATAGTCGAAAAGGGAAGCCAAAACTTTGTAATTTCAGGCTTTCGCAGGATGAAACATCACTGATTTGGATTTCTCATGGAAAAGAAAAGAATCTGAACTTGTCTTCTGTTTGGCGCATCATCTCGGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGATTATCTCTCATTTTCACTTATTTACAAAAAAGGCGAACGGTCACTTGATCTGATCTGTAAAGATACAGCTGAGGTTGAGATTTGGCTTTCGGGCCTTAAGGCATTAATTTCTACTGGACAGGGTAGAAGGCGGCACACTAGAAGTGAATTAACAGATGATAGTGATGAATTTCCTCTGAATGGTCGTCCTTTTGGTGGAGCATTTGAGTTTACTTCAATTATTTCCAAGAGCAGGTTTTCTTTTGAAACATCCTCTTGTGAATCCGCGACGTACAGAGGAAGATCAGATGTGGGGTCAGATCATGCAAGTATGCCAGTAAGGACGAGTGTTGGAGATGGTTCCCGTGTTAGTGTGTCAGGTGTTAGCTATGTTAGTAGTGTAGGATCAGGAGGACCAGATGACATAGAGTCTCTAGGCGACGTTTTCATATGGGGAGAGGTTTGGGCTGACGGGAATTCCTCTGACGGGTTAGGGAGTCAAGTCGCTTCCAAGACAGATGTCCTGGTTCCTAAGTCATTAGAGTCTAATGTTGTTCTTGATGTTCATTTAATACAACCTGGTGTAAATCACGTTGCTCTAGTAACACGGCAAGGAGAGGTTTTTACCTGGGGAGAGGACTTTGGTGGAAGACTTGGACACGGGTTTGATAAAGATTTTGGTAAACCGAATCTTGTCGAGTCCCTAGCAGTTACTAACATGAATTTTGTTGCATGTGGTGAATATCATACATGTGCGGTATCTACATCCGGGGATTTGTACACCTGGGGTGACGGGGCACATAACGCTGGAATTTTAGGCCATGGAACTGATGTTAGCCATTGTATACCGAAGCGTGTCAGTGGGATTTTAGAAGGACATCAGGTTATATCTATAGCATGTGGCTCATGGCATACAGCATTGATAACCGCCAATGGGAAACTTTTTACTTTTGGTGATGGAATGCTAGGTGTATTAGGGCATGGAGATAGAGAGAGTGTGTTGTATCCAAAAGAGGTACAGTTATCTAGTGGACATAAGGCTATTCAGGTTGCATGTGGAGTGTGGCACACGGCAGCCATTATAGAGGTCACGGATCATTCGGGTTCAAATCCTTCTTCATCAAAGAGGATATTCACGTGGGGCGATGGTGATCAATATCGTTTAGGTCATGCTAACAAGGAAACCTGCCTTCAACCGACTTGTGTGGCTGCACTTGCTGAATATAACTTTCACCAGGTTGCATGTGGACAAAGTTTGACTGTTGCACTAACCGCATCCGGCCATGTATTTAGTATGGGAAGCACGGCATACGGTCAACTAGGAAATCCAAACTCTGATGGCAAAGTGCCAATTCTAGTAAGAGATAAGTTACAGGGTGAATCTGTTGAGGAAATATCGTGCGGCGCACATCATGTTGCGGTATTAACTTCAAGAAGTGAGCTATATACTTGGGGGAGAGGTGCCAATGGAAGATTAGGACATGGAGACATAGAAGATCAGAAAACTCCAACATTGGTGGAAGCCTTGAAAGAAAGGCATGTAAAGAATATTGCATGTGGCGCAAATTTTACTACTTGTATATGCATACATAAATGGGTTTCTGGGAATGACCAATCGGTTTGCTCCGGTTGCAGGCAACCATTCGGTTTTACTAGAAAAAGACATAATTGTTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCGAAAAAAGCCCTTAAAGCAGCATTGGCTCCTACACCTAGCAAACCGCATCGTGTGTGTGACACTTGCTATGCTAAGCTTAAAGGTTCTGATAGTGGTAACAGTTCCAGTTATAATCGAGACATTACTCGTCCTTCTAGTTCCACTTATGGAAGGGAAAAATATGACAGGGGAGATGTAAGGACTTCAAGTATTCTCTTGTCTTCTGCCACTGGTCAAGCGAAATACTTTGACATAAGGAGTAATGGGCTTGGAAGTGCACAAGACTTATCTCCCATGGTTCCGTTGCGATTACAATTGAAAGATGTCATATTTCCTGGTTCATCAAGTACGACGCAGAATGCCACTGCGTCGAGGCCTCTTATTATGCAGCAAAGTAATCCCCCAACCCCACCTTCATTGGTTAATTCAAGACCAACCTCTCCAAAAAAAAACGAGCTTTTGAGTCAAGAAGTCTCAAAGTTGCAAAACCATATTCGAAGTTTAAAGCAAAAAGCTAACATGAAAGATACGAAGATTCATGAGCTTCAGAAAAATATTCAAGAAGCCAATCTATTGGCTGGAGAGGAATCTTCTAAGCATAGAGAGGCAAGGGAATTCATCAAGTCCATGACAGATGAGTTGAGGGAAGTGACTGAAAAGCTGCCACCAGAGAATCCTGGATGTGAAACCTTGAAAGAGATCCATGCTCAAGCTCAATCTATTCTGAAACAAAATGTAGAATTTGAATCTCCATTCCAATCGAGCTTTGAGTCTGAGAAACAAAGTGCGCCTGATATATCAGAATCAGATAGCGAATTTTCAAACCTGCAAAGAATCGAAGGAAATGGTGAAGTTTCTGAGGCTGTTCCATCTATAGATGGAGAAACTGTTCCGCAAGAAAGCAACAGCTCGTATTTATCTAGTTCCAGATCAGCCGAGTCGCACAGGACTGTGAAAGAAGGAGAAACATCGGTCATTGAACAATTCGAACACGGTGTTTATATCACAGTCATAGTAGAATCTGATGGTGGCAAAATTTTCAAACGTGTTAGATTCAGTAAGCGAAGATTCAATGAGCAACAAGCAGAAGAATGGTGGAACAAAAACAAAGATAGGGTGTATAGAAGATATACTCCACCACAAGAAATTATTGGTTCATCTAGCACCCCACCTCATGGTGAAGGAAATATTGAGACATCACCTTCTTCTTAA 3141 0.4215 MADPDSYGNPERDIEQAFLTLKRGTQLVKYSRKGKPKLCNFRLSQDETSLIWISHGKEKNLNLSSVWRIISGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDTAEVEIWLSGLKALISTGQGRRRHTRSELTDDSDEFPLNGRPFGGAFEFTSIISKSRFSFETSSCESATYRGRSDVGSDHASMPVRTSVGDGSRVSVSGVSYVSSVGSGGPDDIESLGDVFIWGEVWADGNSSDGLGSQVASKTDVLVPKSLESNVVLDVHLIQPGVNHVALVTRQGEVFTWGEDFGGRLGHGFDKDFGKPNLVESLAVTNMNFVACGEYHTCAVSTSGDLYTWGDGAHNAGILGHGTDVSHCIPKRVSGILEGHQVISIACGSWHTALITANGKLFTFGDGMLGVLGHGDRESVLYPKEVQLSSGHKAIQVACGVWHTAAIIEVTDHSGSNPSSSKRIFTWGDGDQYRLGHANKETCLQPTCVAALAEYNFHQVACGQSLTVALTASGHVFSMGSTAYGQLGNPNSDGKVPILVRDKLQGESVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDIEDQKTPTLVEALKERHVKNIACGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDTCYAKLKGSDSGNSSSYNRDITRPSSSTYGREKYDRGDVRTSSILLSSATGQAKYFDIRSNGLGSAQDLSPMVPLRLQLKDVIFPGSSSTTQNATASRPLIMQQSNPPTPPSLVNSRPTSPKKNELLSQEVSKLQNHIRSLKQKANMKDTKIHELQKNIQEANLLAGEESSKHREAREFIKSMTDELREVTEKLPPENPGCETLKEIHAQAQSILKQNVEFESPFQSSFESEKQSAPDISESDSEFSNLQRIEGNGEVSEAVPSIDGETVPQESNSSYLSSSRSAESHRTVKEGETSVIEQFEHGVYITVIVESDGGKIFKRVRFSKRRFNEQQAEEWWNKNKDRVYRRYTPPQEIIGSSSTPPHGEGNIETSPSS 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00238 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Vifa3g00238 1046 MobiDBLite consensus disorder prediction 895 924 - -
Vifa3g00238 1046 Gene3D - 448 624 IPR009091 -
Vifa3g00238 1046 Pfam Transcription factor BRX N-terminal domain 838 868 IPR027988 -
Vifa3g00238 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Vifa3g00238 1046 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 615 677 IPR017455 -
Vifa3g00238 1046 SUPERFAMILY RCC1/BLIP-II 226 612 IPR009091 -
Vifa3g00238 1046 SUPERFAMILY PH domain-like 14 123 - -
Vifa3g00238 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
Vifa3g00238 1046 MobiDBLite consensus disorder prediction 678 704 - -
Vifa3g00238 1046 SUPERFAMILY FYVE/PHD zinc finger 611 679 IPR011011 -
Vifa3g00238 1046 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 859 - -
Vifa3g00238 1046 Pfam Transcription factor regulating root and shoot growth via Pin3 966 1020 IPR013591 -
Vifa3g00238 1046 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Vifa3g00238 1046 MobiDBLite consensus disorder prediction 678 698 - -
Vifa3g00238 1046 MobiDBLite consensus disorder prediction 1024 1046 - -
Vifa3g00238 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 682 IPR013083 -
Vifa3g00238 1046 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Vifa3g00238 1046 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Vifa3g00238 1046 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Vifa3g00238 1046 PRINTS Chromosome condensation regulator RCC1 signature 554 575 IPR000408 -
Vifa3g00238 1046 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Vifa3g00238 1046 PRINTS Chromosome condensation regulator RCC1 signature 496 514 IPR000408 -
Vifa3g00238 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Vifa3g00238 1046 CDD PH_PLC_plant-like 12 124 - -
Vifa3g00238 1046 MobiDBLite consensus disorder prediction 938 955 - -
Vifa3g00238 1046 FunFam PH, RCC1 and FYVE domains-containing protein 1 196 445 - -
Vifa3g00238 1046 MobiDBLite consensus disorder prediction 895 962 - -
Vifa3g00238 1046 Pfam FYVE zinc finger 611 676 IPR000306 GO:0046872
Vifa3g00238 1046 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vifa3g00238 1046 Gene3D - 13 131 IPR011993 -
Vifa3g00238 1046 MobiDBLite consensus disorder prediction 1020 1046 - -
Vifa3g00238 1046 Coils Coil 794 828 - -
Vifa3g00238 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Vifa3g00238 1046 Gene3D - 185 347 IPR009091 -
Vifa3g00238 1046 Gene3D - 348 447 IPR009091 -
Vifa3g00238 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Vifa3g00238 1046 SMART fyve_4 609 678 IPR000306 GO:0046872
Vifa3g00238 1046 MobiDBLite consensus disorder prediction 758 795 - -
Vifa3g00238 1046 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 378 388 IPR000408 -
Vifa3g00238 1046 ProSiteProfiles BRX domain profile. 966 1021 IPR013591 -
Vifa3g00238 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 456 503 IPR000408 -
Vifa3g00238 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Vifa3g00238 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 336 388 IPR000408 -
Vifa3g00238 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 560 607 IPR000408 -
Vifa3g00238 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 506 555 IPR000408 -
Vifa3g00238 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00238 Vifa-Chr3 22514960 22519642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00238 941 1020 Major Intrinsic Protein MIP AT1G31880 37.500 5.90e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00238 - - mtr:11430388 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00238 3 22514960 22519642 Vifa3g00238 3 22514960 22519642 ECH