Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00234 ATGGATCTTGTTATCGGTGGAAAATTCAAACTTGGCAGGAAAATTGGGAGTGGATCGTTTGGAGAGCTTTACTTGGGTGTTAATGTGCAAACTCAAGAGGAAGTGGCTGTTAAGCTGGAACCAGTGAAGACAAAGCATCCTCAACTTCTCTATGAATCCAAATTGTATATGCTTCTTCAAGGAGGAACCGGCATACCTCATATAAAGTGGTCTGGAGTCGAGGGAGACTACAATGTCATGGCTATCGACCTTCTTGGACCAAGTCTCGAAGACTTGTTTAACTATTGCAGTAGAAATTTCTCTCTGAAAACAGTGTTGATGCTTGCAGATCAACTAATAAACAGAGTTGAGTATATGCACTCTCGGGGATTTCTGCATCGTGATATAAAGCCTGACAACTTCTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATACATTATTGACTATGGCCTTGCAAAAAAGTATCGTGATCTTCAGACACATAAGCATATACCATACAAGGAAAACAAAAACCTCACTGGAACTGCTCGATATGCAAGTGTTAATACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCTTGAAAGCTGGTACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTGTGCAAGTTACATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCCGATTATTCATATCTTAAGAGGCTCTTTCGGGACCTATTCATTAGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAGTCGGACCCAGCTCTAGAACACGGCCGAGTGTGAAACCAGCCTTAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTCGGACAAGAGATTCGAGATAGATTATCAGGTGCAGTGGGAGCATTTTCAAGAAGGAATGGTTCTGGGCATGGACTGCATAAGGATCTTTCCAAGCATAGATCTTTAGATAATATGCCATCTCCCAAAGATGTGCAACCTGATTCTGACAGGGCTCGTAGTTCTACACGTAATGGCAGTTCTTCAAAAAGGCCTATGATATCAAACAGCAGACCAAGCTCTTCCGGGGAGCCTAGTGAAGGCCGATCTAGCCGACTGGTCTCGAGTAGTAGTCGTCTATCTACTACTCAGAGGGTTCAACCAGGTTTTGAATCCAAATCATCCTTCACCCGTGCCGCCACCGCAGGGACACGAGGCAGCCGCGATGATACACTCAAGAGCTTTGAGCTCCTGTCAATTGGTACTGGGAAAAGGAAATGA 1395 0.4287 MDLVIGGKFKLGRKIGSGSFGELYLGVNVQTQEEVAVKLEPVKTKHPQLLYESKLYMLLQGGTGIPHIKWSGVEGDYNVMAIDLLGPSLEDLFNYCSRNFSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYKENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKLHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQVGPSSRTRPSVKPALNPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSGHGLHKDLSKHRSLDNMPSPKDVQPDSDRARSSTRNGSSSKRPMISNSRPSSSGEPSEGRSSRLVSSSSRLSTTQRVQPGFESKSSFTRAATAGTRGSRDDTLKSFELLSIGTGKRK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00234 464 CDD STKc_CK1_delta_epsilon 8 282 - -
Vifa3g00234 464 SMART serkin_6 9 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00234 464 PANTHER CASEIN KINASE-RELATED 13 401 - -
Vifa3g00234 464 MobiDBLite consensus disorder prediction 347 376 - -
Vifa3g00234 464 MobiDBLite consensus disorder prediction 377 446 - -
Vifa3g00234 464 MobiDBLite consensus disorder prediction 339 448 - -
Vifa3g00234 464 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa3g00234 464 MobiDBLite consensus disorder prediction 299 327 - -
Vifa3g00234 464 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
Vifa3g00234 464 FunFam Casein kinase 1-like protein 1 329 - -
Vifa3g00234 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa3g00234 464 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00234 464 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00234 464 FunFam Putative Casein kinase I 1 85 - -
Vifa3g00234 464 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00234 Vifa-Chr3 21932555 21937130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00234 8 213 MAP Kinase Kinase Kinase AT3G06030 26.852 1.83e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa3g00234 Pkinase 1.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00234 K08960 - cave:132177205 797.349