Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00225 ATGGATATTGTAATTTCTGTTGTTGGAAAGGTCTCAGAGTATACTGTTGCTCCTATTGGACGTCAAGCAAGTTACTTGATATGCTACAAAGCCAATTTCAAAATGTTAGCTGATGATGTTAAAGATCTTGATGATGAAAGACAAAGGATGATCCATTTGGTTGAAGAAGAAAGGAGAAATGGTAAAACAATTTTTCCAGGTGTGGAGACATGGATTAAGAATGTGGATGAGGTCATTGAAAAAGTGGCTCAGCTTCAAAATGATCCTCGCCATGCCAATCTTAGGTGCTCAGCATGGCCATTTCCCAATTTGATTTCACGTCATCAACTAAGCAGGAAATCCACAAAACTTGCAAAAGATGTTGTTCAATTTAAACAAAAAAGGTTTTCTGGTCCACTTGGTTTCCTTCCTGCTCTAGATGGAGTAGCCTCTTCTTCCTCAACAAGAGGTGATGAAAAATATGAGACAAGAGAGACACTTAAGCAGGAGATTATGGAAGCTTTAAAAGATCCTAATTCACGCAACATTGGGGTGTATGGGTTGGGTGGGGTGGGTAAGACCACTCTGGTGAAGGAAGTTTCTCAAATAGCCAAGCAACACAAATTGTTCGATGAAGTGGTTACAACGCATGTATCCCAAAATCCAGACTTGAAAACAATTCAAGGGGAGATTGCAGATACATTGGGTCTGCGATTCCCTGATGAGACTATTCAAGGCAGAGCTGATCGACTAAGACAGAGAATCAAGAAAGAGAAAAGTATCCTTATCATTCTAGATGATATATGGACCGTAATTGATTTGAAGAATGTGGGAATTCCATTTGGTGATGAGCATAATGGTTGCAAATTGTTTATGACAAGTAGAAGTCAAAATGTGTTGGTACAAATGGATGTTCCAAAAGATTTCACTTTCAGACTTGAACTTATGAGTGAAAAAGAGGCATGGAGCTTGTTTCAATTTATGGCTGGTGATGTGGTTAACAATAGGGATTTGAAAGATGTAGCAATTCAAGTTGCCCAAAAATGTGCGGGTTTGCCTCTTCGTGTTGTTATGGTAGCACGTGCAATGAGAAATAAGAGGGATGTCCATTCTTGGAACGATGCATTAAGGAAATTACAAAGTAATGATCATGCAGGGATGGACACATTAACTTATTCTGCTTTGGAATTGAGTTACGACGCATTGGAAAGTGATGAAGTTAGGGATCTATTCTTGCTTTTTGCATTACTTCTAGGTAACATTAGAGAGTATTCTCTAGAAGTTGCAATGGGTTTGGACATATTAAAGCATGTTAATACCATGGATGATGCAAGAAATAGACTTTACGCAATAATAAAATCTTTGGAGGAGACATGTCTTTTGCATGAAAGTAAAACAAGCGGAGAGATCAAAATGCATGACTTTGTTCGTGATTTAGCTATATCCATAGCACGCAGGGACAAACATGTATTTCTAAGGGAATTTGCTGATATGGAATGGCCAACTAATGATTTTTTGAACAGGAATCGAACTTTAGAAATCCCAGATATGTTTTTTGAGGATTTCTGTGTTTTGGAAAACATGGATGTAATAGAAGCTTTGCAAAATTAG 1590 0.3792 MDIVISVVGKVSEYTVAPIGRQASYLICYKANFKMLADDVKDLDDERQRMIHLVEEERRNGKTIFPGVETWIKNVDEVIEKVAQLQNDPRHANLRCSAWPFPNLISRHQLSRKSTKLAKDVVQFKQKRFSGPLGFLPALDGVASSSSTRGDEKYETRETLKQEIMEALKDPNSRNIGVYGLGGVGKTTLVKEVSQIAKQHKLFDEVVTTHVSQNPDLKTIQGEIADTLGLRFPDETIQGRADRLRQRIKKEKSILIILDDIWTVIDLKNVGIPFGDEHNGCKLFMTSRSQNVLVQMDVPKDFTFRLELMSEKEAWSLFQFMAGDVVNNRDLKDVAIQVAQKCAGLPLRVVMVARAMRNKRDVHSWNDALRKLQSNDHAGMDTLTYSALELSYDALESDEVRDLFLLFALLLGNIREYSLEVAMGLDILKHVNTMDDARNRLYAIIKSLEETCLLHESKTSGEIKMHDFVRDLAISIARRDKHVFLREFADMEWPTNDFLNRNRTLEIPDMFFEDFCVLENMDVIEALQN 529
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00225 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 406 IPR027417 -
Vifa3g00225 529 Gene3D - 141 301 IPR027417 -
Vifa3g00225 529 Coils Coil 68 88 - -
Vifa3g00225 529 PRINTS Disease resistance protein signature 175 190 - -
Vifa3g00225 529 PRINTS Disease resistance protein signature 248 262 - -
Vifa3g00225 529 PRINTS Disease resistance protein signature 342 356 - -
Vifa3g00225 529 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 20 502 - -
Vifa3g00225 529 FunFam Probable disease resistance protein At1g61300 142 301 - -
Vifa3g00225 529 Pfam NB-ARC domain 158 392 IPR002182 GO:0043531
Vifa3g00225 529 SMART AAA_5 172 310 IPR003593 GO:0016887
Vifa3g00225 529 Coils Coil 40 60 - -
Vifa3g00225 529 Gene3D - 308 396 IPR042197 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa3g00225 Vifa-Chr3 20193567 20195351 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00225 174 480 WRKY Transcription Factor Family AT5G45050 24.684 5.03e-10 60.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00225 - - psat:127092588 758.059