Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00223 ATGGATATTCTAATTTCTGTTGTTGGAAAGGTCTCAGAGTATACTGTTGCTCCTATTGGACGTCAAGCAAGTTACTTGATACGCTACAAAGCCAATTTCAAAACGTTAGCTGATGATGTTAAAGAAATTGAATATGCAAGACAAAGAATGATGATTTTGGTTGAAGAAGAAAGGAGAAATGGTAAAACAATTTTTCCAGATGTGGAGACATGGATTAAGAATGTGGACGAGGTCATTGAAAAAGCGACTCAGCTTCAAAATGATCCCCGCCATGCCAATCTTAGGTGCTCAGCATGGCCATTTCCCAATTTGATTTCGCGTCATCAACTAAGCAGGAAATCCACAAAACTTGCAAAAGATGTTGTTCAATTTAAAGAAAAAAAGTTTTCTGGTCCACTTGGTGCTCTAGATGGAGTAGCCTCTTCTTCCTCAACAAGAGGTGATGAAAAATATGAGACAAGAGAGACACTTAAGCAGGAGATTATGGAAGCTTTAAAAGATCCTAATTCACGCAACATTGGGGTGTATGGGTTGGGTGGGGTGGGTAAGACCACTCTGGTGAAGGAAGTTTCTCAAATAGCCAAGCAACACAAATTGTTCGCTGAAGTGGTTACAACGCGTGTATCCCAAAATCCAGACTTGAAAACAATTCAAGGGGAGATTGCAGATACGTTGGGTCTGCGATTCCCTGATGAGACTATTCAAGGCAGAGCTGATCGACTAAGACAGAGAATCAAGAACGAGAAAAGTATCCTTATCGTTCTAGATGATATATGGACCGTAATTGATTTGAAGAATGTGGGAATTCCATTTGGTGATGAGCATAATGGTTGCAAATTGTTTATGACAAGTAGAAGTCAAAATGTGTTGGTACAAATGGATGTTCCAAAAGATTTCACTTTCAGACTTGAACTTATGAGTGAAAAAGAGACATGGAGCTTGTTTCGATTTATGGCTGGTGATGTGGTTAACAATAGGGATTTGAAAGATGTAGCAATTCAAGTTGCCCAAAAATGTGCGGGTTTGCCTCTTCGTGTAGTTATGGTAGCACGTGCATTGAAAAATAAGAGGGATGTCCATTCTTGGAACGATGCATTAAGGAAATTACAAAGTAATGATCATGCAGGGATGGACACATTAACTTATTCTGCTTTGGAATTGAGTTACGACGCATTGGAAAGTGGTGAAGTTAGGGATCTATTCTTGCTTTTTGCATTACTTCCCGGTGGTCATATACAGTACTATCTGGAAGTTGCAATGGGTTTGGACATATTAAAGCATGTTAATACCATGGATGATGCAAGAAATAGACATTACGCAATAATCAAATCTTTGGAGGAGACATGTTTTTTGCATGAAAGTAAAACAAGCGGAGAGATCAAAATGCATGACTTTGTTCGTGATTTTGCTACCTCCATAGCACGCAGGGACAAACATGTATTTCTAAGGGAATTTGCTGATATGGAATGGCCAACTAATGATTTTTTGAACAGGTGCACGCAGATCATTCTACGTAAATGTCATAATTTGCACGAGCTTCCTCCAAAGGTTGATTGTCCAAGCATTAAGTTTTTCTGTTTCATCAGCAGGAATCGAACTTTAGAAATCCCAGATATGTTTTTTGAGGGTATGAAAAACCTTACAGTGCTAGATTTAACATATCTGACCTTACCTTCATTACCTACTTCGTTTAGGTTCCTAACCGGTCTTAAATCATTGTGTCTAGATTTCTGCGTTTTAGAAAACATGAATGCAATAGAAGCTTTGCAAAATTTAGAAATTCTTAGTTTCTGGAAATCTTCAATGATCAAGTTGCCAAGAGAAATAGGGAGATTGACTAAATTGAGAATGCTTAAATTGAGCCATTCAGGAATAGAAGTAGTCCCACCCAATATCTTATCAAACTTGACTAAGTTGGAGGAGTTGTACATGGGCAATACGTCTATTAATTGGGCAGATGTGAATTCTACAGTTGAAAATGAAAATGCTAGCATTGCCGAGCTTCGGAAACTACCCAACTTGACAGCTCTAGAATTACAAATTCGCGAGACTTGGATGTTGCCAAGGGACTTGCAACTGATTTTTGAGAAGCTGAAAAGATACAGAATAGCTATTGGAGATGTATGGGAATGGTCTGACATTAAGTATGGAACCTTAAAGACATTGATGCTCAAACTTGGTACCAACATACATTTGGAGCACGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTACTTGGATGACGTAGATGGAATTCAAAATGTGCTTTATGACCTAAATGGGGAAGGATTTCCATTGCTGAAACATCTCCACATCCAAAATAATGCAAATGTGAAGCACATTGTTGACTCTAAGGAGAGGAATCAAATCCATGTGTCCTTTCCCATCTTGGAAACTCTGCTACTTGATAATCTTAAAAACTTAGAAAATATATCTCATGGTCCACTTTCAGCTACTTCTTTTGAAAGTCTTAGTGTTATCAAAGTCAAAAGTTGCTTCCAATTAAAATATCTTTTCTCCTTTACAATGGTTAAACGACTTTCCCACCTTTCTAAGATTGAAGTTTGTCAGTGCAATTCTATGAAAGATATAGTACTCGAAGACAACAGTTCAAGTGCAAATAATGAAAAAATTGAGTTCCTTCAATTGCGTTCTCTGACTCTAGAACATTTGGAGACACTCGATAATTTCTTCTCACACTCCAAAAGTAAGCAAAAGTATCAAGGTTTGGAACCTTATGTTTCTTCTACACCATTTTTCAATGTCCAGGTTGCATTTCCTAATTTGGATACCCTTAAATTGAGCTCACTCAATTTGAGTAAAATTTGGGATGATTATTCCACGTACAACTTGACTAGTTTGATTGTGGAGAGTTGTGGCGGGTTGAAGTACTTATTCTCTTCTACGGTGGTCGGAAGTTTTAAGAACCTCAAACACCTTAAAATAAGTAATTGTCCTTTGATGGAAGAAATAATATCTAAAGAAGAGGGAAACAATCCATTGAATGAGGTTCCTTTCTTGAAATTAGAGAAAATAATATTGAAGGATATGGACAACTTGAAGACAATATGGCACCACCAATTTGGGTCATTGAAGTCGTTGCATGTGAGCAATTGTAAAAGAATTGTGGTAATTTTTCCTTCTTCAATGCAAAAAACTTATAACAAATTAGAGATGTTGGAGGTTACAAATTGTGCTTTGGTGGAAGAAATATTTGAGTTGACTTTCAGCTGTATAGAGGATACAACACATCTGAAAAAAGTTACAATAATTGGATTGCCGAAGTTGAAAAAGATATGGAGTCGGGATCCTAAAGAAATTCTTAGCTTTCAAAATCTAATAGATGTGCAACTAAATGGTTGTCAAAATTTGGAGTATCTATTACCATTTTCTGTAGCCACTACTAGTTGTTCACTTCTCAAAGAGCTTGTGATAAAAAATTGTGCAAGCTTGAATAGAATTGTTGCAGAGAAGAAAGAATCTAGGGTGTGTGCATGTCCCATATTTATGTTTAATCAACTGAGCACTCTAGTGCTTTGGAACTCGAACAAACTCAAGTGTTTCTATGTTGGAGAGCATACTCTATCATGTCCATCTTTGAGGAAAATTGATGTTTTCAGATGTTCAAAATTGAACTTGTATAGAACTCTTTCCACATGCAGCTCTAAAAGTAGTTTTCAACATGATAAACTCTCAGTCGTAACTCAACAACCACCTTTCATCGCCGAAGAGGTTATTCCAAACTTGGAGAGGTTGAGGATAGAACAAAAGGATGCTGACATGATATTGCAAGCCCAAAACTCAAGTGCCCTCTTTACCAAACTGACCTTTCTTGGTTTAGGATTTTATAACAATGAAGACTCTACATTTCCTTATTGGTTTCTTAATAATGTGCATACTCTTGAGGTGTTAGTTGTTGAGTGGAGTCGCTTCAAGAAGATTTTTCAAAACGAAAAACAAACAAGTGAGAAGACTCATACTCGGATAAAAAATCTGGTATTGAGTGAATTACATAAACTTCAACAAATATGTGAGGAAGGATCTCGAATTGACCCAGTTCTTGAGTTCCTTGAACACTTATGGGTTGCTAGCTGTTCTAGTTTGACAAATTTGTTGCCTTCCTCTGTCACCCTTAATCATTTGAATTATCTAGAGATAATAAGTTGCAATGGTCTAAAAAGTTTAATTACAACTCCAACGGCACAGAGTTTGGTCAAACTCAAAACACTTAAGGTAAGAGATTGTAAATCACTTGAAGAAATAATTACCGGAGTAGAAAGTGTTGACATTGCATTTGTTAGTTTAGAAGTTTTGATGTTGGAATGTTTGCCAAGCCTCAACAAATTTTGCTCTAGCAAGTTCTTCTTGAAGTTTCCGTTGTTGGAGAAAGTAATTGTGAGAGAATGTCCTTACATGAAGATGTTTTCAGAGAGAAACCCAAGTACACCAAATCTTCGAAAAGTTAAAAATGCAGAAAATGAAGAGGAATGGCATTGGAAGGGAAACCTAAATGATACAATAAAAAAAATGTTTGAAGAAAAGGTTGGATTTTCTAAATTCAAATATTTAGCCTTATCGAACCACCCTGTGCTAAAGGATTTATGGTATGGCCAAGTGGATCATCAGAATGTATTTTGCAATCTGAAACATCTAGTGGTGCAAAGATGTGATTTCTTATCACATGTACTTTTTCCATCAAATGTTGTTCAAGTGCTACATAAATTGGAAGAACTAGAAGTGAACAACTGTGATTCATTAGAAGCCATATTTGATGTTAAAGGTATGAAGTCTAATGAATCAATATTGATAAAACAAAGCAGTCAATTAAAAACGTTGACTTTGTCTTGTTTATCAAACTTGGAGCACATATGGAACGAGGATCCTCATGAAATTATGAACTTTGGAAACCTATGCTCGGTGGATGTTTCTTCGTGCCAAGGCTTGTTATACATCTTTTCATTGTCCATGTGCCAAGATCTTGGAAATCTTGAAATGCTTGAGATAGATTCTTGCGGAGTCGAGGATATTGTTGCAATGAGAGACGGACCAATGGAAATTAGTTTAAATTTCCCCCTACTAAATACATTGGTACTATGCGGTTTGACAAAACTAAAGAGTTTCTATCAAGGAAAACATACTTTAGAATGCCCTTCATTGAAGATTTTGAATGTATGTCGTTGTGAAACATTGAGAATGTTTTCCTTCAACAATTTAGACTTGCAACAACCCGAGTATTTGGTGGATGAAAGTTCCCAACAAGCCCTTTTTTCTATTGAAAAGCTAAGCACCAACCTGGAGGAATTGACGATAAATGCAAAGGATGCCTTTAGAATGTTGAATGATTACTGTCAAGAAAATATCTTTCCTAAAATACAACGTCTTCGTTTGCAACGCTTTGATGAAACTCCAACTGTTTTTTTGAATGATTTCCATGCAATATTACCTAATCTAACAACTCTTCAATTGCGTAATAGTTGTTTTGAAACATTATTCCCTTCAAAAGGAACTCCTGGCAATCTCAATGATGAACTTTCTAAGCAAATAAAAGAGTTGTGGCTTTATGAATTGGAAAAGATGAAGTATATTTGCCACGAAGATTTTCCATTGAATCTTGAAGATTTATACGTAAATAGTTGTCCAAGTTTGATATGCTTGATACCATCGTCCACATCTTTCACAAATATGACGACTTTGGAGGTGAATGATTGCAAAGAGTTGTTTTACTTGATAACATCTTCAACAGCTAAAAGCTTAGTTCAGCTCAGAGAATTAAAAATAAAGAAGTGTGAGAAGATGTTGGATGTTGTGAAGATTGATGATGAAAAAGTAGAGGAAGACATCATATTTGAAAATTTGAAAATCTTGAAGTTCATTACTTTGTTAAGTTTAAGAAGCTTCTCAAGTGGGAAACAAACATTCATATTCCCATCTTTGGTGCATTTTGTTGTTAAAGGATGTCCTCAAATGAAGAATTTTTCATTAGGAGTCACACAAGCACCATGCTTGACAGAAATTGAAGTTGAAGAGGAAAATATACGATGGAAAGGTGATCTTAACACAACTATTAAACAATTGTTCATAGAAAAGCAAGCCCCACATTGTGATGGGACCATCGTATCATCATATTCCCAAGATGATGAGATCGCATGTGAAGATGGTATCGATGCAGAAGCTAAGGAGTGA 6189 0.3623 MDILISVVGKVSEYTVAPIGRQASYLIRYKANFKTLADDVKEIEYARQRMMILVEEERRNGKTIFPDVETWIKNVDEVIEKATQLQNDPRHANLRCSAWPFPNLISRHQLSRKSTKLAKDVVQFKEKKFSGPLGALDGVASSSSTRGDEKYETRETLKQEIMEALKDPNSRNIGVYGLGGVGKTTLVKEVSQIAKQHKLFAEVVTTRVSQNPDLKTIQGEIADTLGLRFPDETIQGRADRLRQRIKNEKSILIVLDDIWTVIDLKNVGIPFGDEHNGCKLFMTSRSQNVLVQMDVPKDFTFRLELMSEKETWSLFRFMAGDVVNNRDLKDVAIQVAQKCAGLPLRVVMVARALKNKRDVHSWNDALRKLQSNDHAGMDTLTYSALELSYDALESGEVRDLFLLFALLPGGHIQYYLEVAMGLDILKHVNTMDDARNRHYAIIKSLEETCFLHESKTSGEIKMHDFVRDFATSIARRDKHVFLREFADMEWPTNDFLNRCTQIILRKCHNLHELPPKVDCPSIKFFCFISRNRTLEIPDMFFEGMKNLTVLDLTYLTLPSLPTSFRFLTGLKSLCLDFCVLENMNAIEALQNLEILSFWKSSMIKLPREIGRLTKLRMLKLSHSGIEVVPPNILSNLTKLEELYMGNTSINWADVNSTVENENASIAELRKLPNLTALELQIRETWMLPRDLQLIFEKLKRYRIAIGDVWEWSDIKYGTLKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLYDLNGEGFPLLKHLHIQNNANVKHIVDSKERNQIHVSFPILETLLLDNLKNLENISHGPLSATSFESLSVIKVKSCFQLKYLFSFTMVKRLSHLSKIEVCQCNSMKDIVLEDNSSSANNEKIEFLQLRSLTLEHLETLDNFFSHSKSKQKYQGLEPYVSSTPFFNVQVAFPNLDTLKLSSLNLSKIWDDYSTYNLTSLIVESCGGLKYLFSSTVVGSFKNLKHLKISNCPLMEEIISKEEGNNPLNEVPFLKLEKIILKDMDNLKTIWHHQFGSLKSLHVSNCKRIVVIFPSSMQKTYNKLEMLEVTNCALVEEIFELTFSCIEDTTHLKKVTIIGLPKLKKIWSRDPKEILSFQNLIDVQLNGCQNLEYLLPFSVATTSCSLLKELVIKNCASLNRIVAEKKESRVCACPIFMFNQLSTLVLWNSNKLKCFYVGEHTLSCPSLRKIDVFRCSKLNLYRTLSTCSSKSSFQHDKLSVVTQQPPFIAEEVIPNLERLRIEQKDADMILQAQNSSALFTKLTFLGLGFYNNEDSTFPYWFLNNVHTLEVLVVEWSRFKKIFQNEKQTSEKTHTRIKNLVLSELHKLQQICEEGSRIDPVLEFLEHLWVASCSSLTNLLPSSVTLNHLNYLEIISCNGLKSLITTPTAQSLVKLKTLKVRDCKSLEEIITGVESVDIAFVSLEVLMLECLPSLNKFCSSKFFLKFPLLEKVIVRECPYMKMFSERNPSTPNLRKVKNAENEEEWHWKGNLNDTIKKMFEEKVGFSKFKYLALSNHPVLKDLWYGQVDHQNVFCNLKHLVVQRCDFLSHVLFPSNVVQVLHKLEELEVNNCDSLEAIFDVKGMKSNESILIKQSSQLKTLTLSCLSNLEHIWNEDPHEIMNFGNLCSVDVSSCQGLLYIFSLSMCQDLGNLEMLEIDSCGVEDIVAMRDGPMEISLNFPLLNTLVLCGLTKLKSFYQGKHTLECPSLKILNVCRCETLRMFSFNNLDLQQPEYLVDESSQQALFSIEKLSTNLEELTINAKDAFRMLNDYCQENIFPKIQRLRLQRFDETPTVFLNDFHAILPNLTTLQLRNSCFETLFPSKGTPGNLNDELSKQIKELWLYELEKMKYICHEDFPLNLEDLYVNSCPSLICLIPSSTSFTNMTTLEVNDCKELFYLITSSTAKSLVQLRELKIKKCEKMLDVVKIDDEKVEEDIIFENLKILKFITLLSLRSFSSGKQTFIFPSLVHFVVKGCPQMKNFSLGVTQAPCLTEIEVEEENIRWKGDLNTTIKQLFIEKQAPHCDGTIVSSYSQDDEIACEDGIDAEAKE 2062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00223 2062 Gene3D Ribonuclease Inhibitor 1433 1842 IPR032675 -
Vifa3g00223 2062 Pfam NB-ARC domain 155 389 IPR002182 GO:0043531
Vifa3g00223 2062 Gene3D Ribonuclease Inhibitor 1855 2033 IPR032675 -
Vifa3g00223 2062 Coils Coil 68 88 - -
Vifa3g00223 2062 PRINTS Disease resistance protein signature 974 990 - -
Vifa3g00223 2062 PRINTS Disease resistance protein signature 172 187 - -
Vifa3g00223 2062 PRINTS Disease resistance protein signature 245 259 - -
Vifa3g00223 2062 PRINTS Disease resistance protein signature 339 353 - -
Vifa3g00223 2062 Gene3D Ribonuclease Inhibitor 497 1002 IPR032675 -
Vifa3g00223 2062 Gene3D Ribonuclease Inhibitor 1032 1165 IPR032675 -
Vifa3g00223 2062 SMART AAA_5 169 307 IPR003593 GO:0016887
Vifa3g00223 2062 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1576 1736 - -
Vifa3g00223 2062 Gene3D Ribonuclease Inhibitor 1168 1430 IPR032675 -
Vifa3g00223 2062 Coils Coil 1760 1780 - -
Vifa3g00223 2062 SUPERFAMILY L domain-like 853 1230 - -
Vifa3g00223 2062 SUPERFAMILY L domain-like 1515 1995 - -
Vifa3g00223 2062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 403 IPR027417 -
Vifa3g00223 2062 Gene3D - 305 393 IPR042197 -
Vifa3g00223 2062 Gene3D - 139 298 IPR027417 -
Vifa3g00223 2062 SUPERFAMILY RNI-like 1353 1604 - -
Vifa3g00223 2062 SUPERFAMILY L domain-like 461 897 - -
Vifa3g00223 2062 Pfam Leucine rich repeat 528 578 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00223 Vifa-Chr3 20139196 20147116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00223 171 477 WRKY Transcription Factor Family AT5G45050 23.642 1.36e-09 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00223 - - psat:127092588 2641.68