Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00222 ATGGATATTCTAATTTCTGTTGTTGGAAAGGTCTCAGAGTATACTGTTGCTCCTATTGGACGTCAAGCAAGTTACTTGATACGCTACAAAGCCAATTTCAAAACGTTAGCCGATCATGTTAAAGAAATTGATGATGCAAGACAAAGAATGATGATTTTGGTTGAAGAAGAAAGGAGAAATGGTAAAACAATTTTTCCAGATGTGGAGACATGGATTAAGAATGTGGACGAGGTCATTGAAAAAGCGACTCAGCTTCAAAATGATCCCCGCCATGCCAATCTTAGGTGCTCAGCATGGCCATTTCCCAATTTGATTTCGCGTCATCAACTAAGCAGGAAATCCACAAAACTTGCAAAAGATGTTGTTCAATTTAAAGAAAAAAAGTTTTCTGGTCCACTTGGTGCTCTAGATGGAGTAGCCTCTTCTTCCTCAACAAGAGGTGATGAAAAATATGAGACAAGAGAGACACTTAAGCAGGAGATTATGGAAGCTTTAAAAGATCCTAATTCACGCAACATTGGGGTGTATGGGTTGGGTGGGGTGGGTAAGACCACTCTGGTGAAGGAAGTTTCTCAAATAGCCAAGCAACACAAATTGTTCGCTGAAGTGGTTACAACGCGTGTATCCCAAAATCCAGACTTGAAAACAATTCAAGGGGAGATTGCAGATACGTTGGGTCTGCGATTCCCTGATGAGACTATTCAAGGCAGAGCTGATCGACTAAGACAGAGAATCAAGAACGAGAAAAGTATCCTTATCGTTCTAGATGATATATGGACCGTAATTGATTTGAAGAATGTGGGAATTCCATTTGGTGATGAGCATAATGGTTGCAAATTGTTTATGACAAGTAGAAGTCAAAATGTGTTGGTACAAATGGATGTTCCAAAAGATTTCACTTTCAGACTTGAACTTATGAGTGAAAAAGAGACATGGAGCTTGTTTCGATTTATGGCTGGTGATGTGGTTAACAATAGGGATTTGAAAGATGTAGCAATTCAAGTTGCCCAAAAATGTGCGGGTTTGCCTCTTCGTGTCGTTATGGTAGCACGTGCATTGAAAAATAAGAGGGATGTCCATTCTTGGAACGATGCATTAAGGAAATTACAAAGTAATGATCATGCAGGGATGGACACATTAACTTATTCTGCTTTGGAATTGAGTTACGACGCATTGGAAAGTGGTGAAGTTAGGGATCTATTCTTGCTTTTTGCATTACTTCCCGTTGGTGATATAGAGTACTATCTAGAAGTTGCAATGGGTTTGGACATATTAAAGCATGTTAATACCATGGATGATGCAAGAAATAGACATTACGCAATAATCAAATCTTTGGAGGAGACATGTTTTCTGCATGAAAGTAAAACAAGTAGATATATCGCAATGCATGACTTCGTTCGTGATTTTGCTACCTCCATAGCAAGCAGGGACAAACATGTACTTCTAATTAAATTTGCTGATGAATGGCCAACAATTGGTCTTTTAAACAGGTGCACCCAGATCATTCTAGATAGTTATCATCATATGCACGAGCTTCCTCAAATGATTGATTGTCCAAGCAATAAATTGTTTTTATTGAAAAGCAAAGATCGATCCTTAGAAATCCCTGATGCGTTTTTTGAGGGTATGAAAAACCTTACAGTGCTAGATTTAACATATCTGACCTTGCATTCATTGCCTACTTCGTTTAGGTTCCTAACCGGTCTTAAATCGTTGTTTTTAGATTTCTGCGTTTTAGAAAACATGAATGCAATAGAAGCTTTGCAAAATTTAGAAATTCTTAGTTTCTGGAAATCTTCAATGATCAAGTTGCCAAGCGAAATAGGGAGATTGACTCAATTGAGAATGCTTAAATTGAGCCATTCAGGAATAGAAGTAGTCCCACCCAATATCTTATCAAGCTTGACTAAGTTGGAGGAGTTGTACATGGGCAATACGTCTATTAATTGGGCAGATGTGAATTCTACAGTTGAAAATGAAAATGCTAGCATTGCCGAGCTTCGGAAACTACCCAACTTGACAGCTCTAGAATTACAAATTCGCGAGACTTGGATGTTGCCAAGGGACTTGCAACTGATTTTTGAGAAGCTGAAAAGATACAGAATAGCTATTGGAGATGTATGGGAATTGTCTGACATTGAAGATGAAAACTTAAAAACATTGATGCTTAAACTTGGTGGTACCAACATACATTTGGAGCACGGAATTAAAGCTTTGATTAAAGGTGTTGAGAATTTGTACTTGGATGATGTAGATGGAATTCAAAATGTGCTTTATCAACTAAATGGGGAAGGATTTCCATTGCTGAAACATCTCCACATCCAAAATAATGCAAATGTGAAGCACATTGTTGACTCTAAGGAGAGGAATCAAATCCATGTGTCCTTTCCCATCTTGGAAACTCTGCTACTTGATAATCTTAAAAACTTAGAAAATATATCTCACGGTCCACTTTCAGCTACTTCTTTTGAAAGTCTTAGTGTTATCAAAGTCAAAAGTTGCTTCCAATTAAAATATCTTTTCTCCTTTACAATGGTTAAAGGACTTTCTCGCCTTTCTAAGATTGAAGTTTGTCAATGCAATTCTATGAAAGATATAGTACTCGAAGACAACAGTTCAAGTGCAAATAATGAAAAAATTGAGTTCCTTCAATTGCGTTCTCTGACTCTAGAACATTTGGAGACACTCGATAATTTCTTCTCACACTCCAAAAGTAAGCAAAAGTATCAAGGTTTGGAACCTTATGTTTCTTCTACACCATTTTTCAATGTCCAGGTTGCATTTCCTAATTTGGATACCCTTAAATTGAGCTCACTCAATTTAAGTAAAATTTGGGATGATTATTCCATGTACAACTTGACTAGTTTGATTGTGGAGAGTTGTGGCGAATTGAAGTACTTGTTCTCTTCTACGGTGGTTGGAAGTTTTAAGAACCTCAAACACCTTGAAATAAGTAATTGTCCTTTGATGGAAGAAATAATATCTAAAGAAGAGAGAAACAATCCATTGAATGAGGTTCCTTTCTTGAAATTAGAGAAAATAATATTGAAGGATATGGACAAGTTGAAGACAATATGGCACCATCAATTTGAGTCATTGAAGTCGTTGCATGTGAACAATTGTAAAAGAATTGTGGTAATTTTTCCTTCTTCAATGCAAAAAACTTATAACAAATTAGAGATGTTGGAGGTTACAAATTGTGTTTTGGTGGAAGAAATATTTGAATTGACTTTCAGCTGTATAGAGGATACAACACATTTGAAAAAAGTTACAATAAATGGATTGCCGAAGTTGAAAAAGATATGGAGTTTGGATCCTAAAGAAATTCTTAGCTTTCAAAATCTAACAGATGTGCAACTAAGTGGTTGTGAAAGTTTGGAGTATCTATTACCATTTTCTGTAGCCACTACTAGTTGTTCACTTCTCAAAGAACTTGTGATAAAAAATTGTGCAAGCTTGAATAGAATTGTTGCAGAGGAGAAAGAATCTAGGGTGTGTGCATATCCCATATTTATGTTTAATCAACTGAGTACTCTAGTGCTTTGGAACTCGAACAAACTCAAGTGTTTCTATGTTGGAGAGCATACTCTATCATGTCCATCTTTGAGGAAAATTGATGTTTTCAAATGTTCAAAATTGAACTTGTATAGAACTCTTTCCACAGGCAGCTCTAAAAGTAGTTTTCAACATGACAAACTCTCATTCGTAACTCAACAACCACCTTTCATCGCCGAAGAGGTTATTCCAAACTTGGAGAGGTTGACGATAGAACAAAAGGATGTTGACATGATATTGCAAGCCCAAAACTCAAGTGCCCTCTTTACCAAACTGACCTTTCTTGGTTTAGGATTTTATAACAATGAAGACTCTACATTTCCTTATTGGTTTCTTAATAATGTGCATACTCTTGAGGTGTTAGTTGTTGAGTGGAGTCGCTTCAAGAAGATTTTTCAAAACGAAAAACAAACAAGTGAGAAGACTCATACTCGGATCAAAATTCTGGAATTGAGTGAATTACATAAACTTCAACAAATATGTGAGGAAGGATCTCGAATTGACTCAGTTCTTGAGTTCCTTGAACAATTATGGGTTGCTAACTGTTCTAGTTTGACAAATTTGTTGCCTTCCTCTGTCACCCTTAATCATTTGAATTATCTAGAGATAATAAGTTGCAATGGTCTAAAAAGTTTAATTACAACTCCTACGGCACAGAGTTTGGTCAAACTCACAACACTTAAGATAAGAGATTGTAAATCACTTGAAGAAATAATTACCGGAGTAGAAAGTGTTGACATTGCATTTGTTAGTTTAGAAGTTTTGATGTTGGAATGTTTGCCAAGCCTCAACAAATTTTGCTCTAGCAAGTTCTTCTTGAAGTTTCCATTGTTGGAGAAAGTAATTGTGAGAGAATGTCCTTACATGAAGATATTTTCAGAAAGAAACCCAAGTACACCAAATCTTCGAAAAGTTAAAAATGCAGAAAATGAAGAGGAATGGCATTGGAAGGGAAACCTAAATGATACAATAAAAAAAATGTTTGAAGAAAAGGTTGCATTTTCTAAATTCAAATATTTAGCTTTATCAAACCACCCTGTGCTAAAGGATTTATGGTACGGCCAAGTGGATCATCAGAATGTATTTTGCAATCTGAAACATCTAGTGGTGCAAAGATGTGATTTCTTATCACATGTACTTTTTCCATCAAATGTTGTTCAAGTGCTACATAAATTGGAAGAACTAGAAGTGAACAACTGTGATTCATTAGAAGCCATATTTGATGTTAAAGGTATGAAGTCTAATGAATCAATATTGATAAAACAAAGCAGTCAATTGAAAACGTTGACTTTGTCTTGTTTATCAAACTTGGAGCACATATGGAACGAGGATCCTCATGAAATTATGAACTTTGGAAACCTATGCTCGGTGGATGTTTCTTCGTGCCAAGGCTTGTTATACATCTTTTCATTGTCCATGTGCCAAGATCTTGGAAATCTTGAAATGCTTGAGATAGATTCTTGCGGAGTCGAGGATATTGTTGCAATGAGAGACCGACCAATGGAAATTAGTTTAAATTTCCCCCTACTAAATACATTGGTACTATGCGGTTTGACAAAACTAAAGAGTTTCTATCAAGGAAAACATACTTTAGAATGCCCTTCATTGAAGATTTTGAATGTAAGTCGTTGTGAAACATTGAGAATGTTTTCCTTCAACAATTTAGACTTGCAACAACCTGAGTATTTGGTGGATGAAAGTTCCCAACAAGCCCTTTTTTCTATTGAAAAGCTAAGCACCAACCTGGAGGAGTTGACGATAAATGCAAAGGATGCCTTTAGAATGTTGAATGATTACTGTCAAGAAAATATCTTTCCTAAAATACAACTTCTTCGTTTGCAACGCTTTGATGAAACTCCAACTGTTTTTTTGAATGATTTCCATGCAACATTACCTAATCTAACAACTCTTCAATTGCGTAATAGTTGTTTTGAAACATTATTCCCTTCAAAAGGAACTCCTGGCAATCTCAATGATGAACTTTCTAAGCAAATAAAAGAATTGTGGCTTTATGGATTGGAAAAGATGAAGTATATTTGCCACGAAGATTTTCCATTGAATCTTGAAGAGTTATACGTAAGTAGTTGTCCAAGTTTGATATGCTTGATACCATCGTCCACATCTTTCACAAATATGACCTCTTTGGAGGTGAATGGTTGCAAAGAGTTGTTTTACTTGATAACATCTTCAACAGCTAAAAGCTTAGTTCAGCTCAGAGAATTAAGAATAAAGAAGTGTGAGAAGATGTTGGATGTTGTGAAGATTGATGATGAAAAAGTAGAGGAAGACATCATATTTGAAAATTTGAAAATCTTGAAGTTCATTACTTTGTTAAGTTTAAGAAGCTTCTCAAGTGGGAAACAAACATTCATATTCCCATCTTTGGTGCGTTTTGTTGTTAAAGGATGTCCTCAAATGAAGAATTTTTCATTAGGAGTCACAGAAGCACCATGCTTGACAGAAATTGAAGTTGAAGAGGAAAATTTACGATGGAAAGGTGATCTTAACACAACTATTGAACAATTGTTCATAGAAAAGCAAGCCCCACATTGTGATGGGACCATCGTATCATCATATTCCCAAGATGATGAGATCGCATGTGAAGATGGTATCGATGCAGAAGCTAAGGAGTGA 6189 0.3595 MDILISVVGKVSEYTVAPIGRQASYLIRYKANFKTLADHVKEIDDARQRMMILVEEERRNGKTIFPDVETWIKNVDEVIEKATQLQNDPRHANLRCSAWPFPNLISRHQLSRKSTKLAKDVVQFKEKKFSGPLGALDGVASSSSTRGDEKYETRETLKQEIMEALKDPNSRNIGVYGLGGVGKTTLVKEVSQIAKQHKLFAEVVTTRVSQNPDLKTIQGEIADTLGLRFPDETIQGRADRLRQRIKNEKSILIVLDDIWTVIDLKNVGIPFGDEHNGCKLFMTSRSQNVLVQMDVPKDFTFRLELMSEKETWSLFRFMAGDVVNNRDLKDVAIQVAQKCAGLPLRVVMVARALKNKRDVHSWNDALRKLQSNDHAGMDTLTYSALELSYDALESGEVRDLFLLFALLPVGDIEYYLEVAMGLDILKHVNTMDDARNRHYAIIKSLEETCFLHESKTSRYIAMHDFVRDFATSIASRDKHVLLIKFADEWPTIGLLNRCTQIILDSYHHMHELPQMIDCPSNKLFLLKSKDRSLEIPDAFFEGMKNLTVLDLTYLTLHSLPTSFRFLTGLKSLFLDFCVLENMNAIEALQNLEILSFWKSSMIKLPSEIGRLTQLRMLKLSHSGIEVVPPNILSSLTKLEELYMGNTSINWADVNSTVENENASIAELRKLPNLTALELQIRETWMLPRDLQLIFEKLKRYRIAIGDVWELSDIEDENLKTLMLKLGGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLYQLNGEGFPLLKHLHIQNNANVKHIVDSKERNQIHVSFPILETLLLDNLKNLENISHGPLSATSFESLSVIKVKSCFQLKYLFSFTMVKGLSRLSKIEVCQCNSMKDIVLEDNSSSANNEKIEFLQLRSLTLEHLETLDNFFSHSKSKQKYQGLEPYVSSTPFFNVQVAFPNLDTLKLSSLNLSKIWDDYSMYNLTSLIVESCGELKYLFSSTVVGSFKNLKHLEISNCPLMEEIISKEERNNPLNEVPFLKLEKIILKDMDKLKTIWHHQFESLKSLHVNNCKRIVVIFPSSMQKTYNKLEMLEVTNCVLVEEIFELTFSCIEDTTHLKKVTINGLPKLKKIWSLDPKEILSFQNLTDVQLSGCESLEYLLPFSVATTSCSLLKELVIKNCASLNRIVAEEKESRVCAYPIFMFNQLSTLVLWNSNKLKCFYVGEHTLSCPSLRKIDVFKCSKLNLYRTLSTGSSKSSFQHDKLSFVTQQPPFIAEEVIPNLERLTIEQKDVDMILQAQNSSALFTKLTFLGLGFYNNEDSTFPYWFLNNVHTLEVLVVEWSRFKKIFQNEKQTSEKTHTRIKILELSELHKLQQICEEGSRIDSVLEFLEQLWVANCSSLTNLLPSSVTLNHLNYLEIISCNGLKSLITTPTAQSLVKLTTLKIRDCKSLEEIITGVESVDIAFVSLEVLMLECLPSLNKFCSSKFFLKFPLLEKVIVRECPYMKIFSERNPSTPNLRKVKNAENEEEWHWKGNLNDTIKKMFEEKVAFSKFKYLALSNHPVLKDLWYGQVDHQNVFCNLKHLVVQRCDFLSHVLFPSNVVQVLHKLEELEVNNCDSLEAIFDVKGMKSNESILIKQSSQLKTLTLSCLSNLEHIWNEDPHEIMNFGNLCSVDVSSCQGLLYIFSLSMCQDLGNLEMLEIDSCGVEDIVAMRDRPMEISLNFPLLNTLVLCGLTKLKSFYQGKHTLECPSLKILNVSRCETLRMFSFNNLDLQQPEYLVDESSQQALFSIEKLSTNLEELTINAKDAFRMLNDYCQENIFPKIQLLRLQRFDETPTVFLNDFHATLPNLTTLQLRNSCFETLFPSKGTPGNLNDELSKQIKELWLYGLEKMKYICHEDFPLNLEELYVSSCPSLICLIPSSTSFTNMTSLEVNGCKELFYLITSSTAKSLVQLRELRIKKCEKMLDVVKIDDEKVEEDIIFENLKILKFITLLSLRSFSSGKQTFIFPSLVRFVVKGCPQMKNFSLGVTEAPCLTEIEVEEENLRWKGDLNTTIEQLFIEKQAPHCDGTIVSSYSQDDEIACEDGIDAEAKE 2062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00222 2062 SUPERFAMILY RNI-like 1349 1603 - -
Vifa3g00222 2062 Pfam NB-ARC domain 155 389 IPR002182 GO:0043531
Vifa3g00222 2062 PRINTS Disease resistance protein signature 172 187 - -
Vifa3g00222 2062 PRINTS Disease resistance protein signature 245 259 - -
Vifa3g00222 2062 PRINTS Disease resistance protein signature 974 990 - -
Vifa3g00222 2062 PRINTS Disease resistance protein signature 339 353 - -
Vifa3g00222 2062 Gene3D - 139 298 IPR027417 -
Vifa3g00222 2062 Coils Coil 68 88 - -
Vifa3g00222 2062 SMART AAA_5 169 307 IPR003593 GO:0016887
Vifa3g00222 2062 Coils Coil 2060 2062 - -
Vifa3g00222 2062 Coils Coil 36 56 - -
Vifa3g00222 2062 Gene3D Ribonuclease Inhibitor 499 994 IPR032675 -
Vifa3g00222 2062 Gene3D Ribonuclease Inhibitor 1236 1496 IPR032675 -
Vifa3g00222 2062 Coils Coil 1760 1780 - -
Vifa3g00222 2062 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1576 1736 - -
Vifa3g00222 2062 Gene3D - 305 393 IPR042197 -
Vifa3g00222 2062 Gene3D Ribonuclease Inhibitor 995 1235 IPR032675 -
Vifa3g00222 2062 Gene3D Ribonuclease Inhibitor 1547 1755 IPR032675 -
Vifa3g00222 2062 Gene3D Ribonuclease Inhibitor 1757 1939 IPR032675 -
Vifa3g00222 2062 SUPERFAMILY RNI-like 1103 1313 - -
Vifa3g00222 2062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 403 IPR027417 -
Vifa3g00222 2062 SUPERFAMILY L domain-like 462 896 - -
Vifa3g00222 2062 SUPERFAMILY L domain-like 1634 2013 - -
Vifa3g00222 2062 SUPERFAMILY RNI-like 928 1157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00222 Vifa-Chr3 20071733 20079430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00222 171 477 WRKY Transcription Factor Family AT5G45050 23.642 4.38e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00222 - - psat:127092588 2618.96