Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00221 ATGGATATTCTAATTTCTGTTGTTGGAAAGGTCTCAGAGTATACTGTTGCTCCTATTGGACGTCAAGCAAGTTACTTGATACGCTACAAAGCCAATTTCAAAACGTTAGCTGATGATGTTAAAGAAATTGATGATGCAAGACAAAGAATGATGATTTTGGTTGAAGAAGAAAGGAGAAATGGTAAAACAATTTTTCCAGGTGTGGAGACATGGATTACGAATGTGGACGAGGTCATTGAAAAAGCGACTCAGCTTCAAAATGATCCCCGCCATGCCAATCTTAGGTGCTCAGCATGGCCATTTCCCAATTTGATTTCGCGTCATCAACTAAGCAGGAAATCCACAAAACTTGCAAAAGATGTTGTTCAATTTAAAGAAAAAAGGTTTTCTGGTCCACTTGGTTTCCTTCCTGCTCTAGATGGAGTAGCCTCTTCTTCCTCAACAAGAGGTGGTGAAAAATATGAGACAAGAGAGACACTTAAGCAGGAGATTATGGAAGCTTTAAAAGATCCTAATTCACGCAACATTGGGGTGTATGGGTTGGGTGGGGTGGGTAAGACCACTCTGGTGAAGGAAGTTTCTCAAATAGCCAAGCAACACAAATTGTTCGATGAAGTGGTTACAACGCATGTATCCCAAAATCCAGACTTGAAAACAATTCAAGGGGAGATTGCAGATACATTGGGTCTGCGATTCCCTGATGAGACTATTCAAGGCAGAGCTGATCGACTAAGACAGAGAATCAAGAAAGAGAAAAGTATCCTTATCGTTCTAGATGATATATGGACCGTAATTGATTTGAAGAATGTGGGAATCCCATTTGGTGATGAGCATAATGGTTGCAAATTGTTTATGACAAGTAGAAGTCAAAATGTGTTGGTACAAATGGATGTTCCAAAAGATTTCACTTTCAGGCTTGAACTTATGAGTGAAAAAGAGACATGGAGCTTGTTTCAATTTATGGCTGGTGATGTGGTTAACAATAGGGATTTGAAAGATGTAGCAATTCAAGTTGCCCAAAAATGTGCGGGTTTGCCTCTTCGTGTCGTTATGGTAGCACGTGCAATGAGAAATAAGAGGGATGTCCATTCTTGGAACGATGCATTAAGGAAATTACAAAGTAATGATCATGCAGGGATGGACACATTAACTTATTCTGCTTTGGAATTGAGTTACGACGCATTGGAAAGTGATGAAGTTAGGGATCTATTCTTGCTTTTTGCATTACTTCTAGAAAACTCTAGAGAGTACTATCTGGAAGTTGCAATGGGTTTGGACATATTAAAGCATGTTAATACCATGGATGATGCAAGAAATAGACATTACGCAATAATCAAATCTTTGGAGGAGACATGTTTTTTGCATGAAAGTAAAACAAGTGGATATATCGCAATGCATGACTTCGTTCGTGATTTTGCTACCTCCATAGCAAGCAGGGACAAACATGTACTTCTAATTAAATTTGCTGATGAATGGCCAACAATTGGTCTTTTAAACAGGTGCACCCAGATCATTCTAGATAGTTATCATCATATGCACGAGCTTCCTCAAATGATTGATTGTCCAAGCAATAAATTGTTTTATTTGAAAAGCAAAGATCGATCCTTAGAAATCCCTGATGCGTTTTTTGAGGGTATGAAAAACCTTACAGTGCTAGATTTAACATATCTGACCTTGCATTCATTGCCTACTTCGTTTAGGTTCCTAACCGGTCTTAAATCGTTGTTTTTAGATTTCTGCGTTTTAGAAAACATGAATGCAATAGAAGCTTTGCAAAATTTAGAAATTCTTAGTTTCTGGAAATCTTCAATGATCAAGTTGCCAAGCGAAATAGGGAGATTGACTAAATTGAGAATGCTTAAATTGAGCCATTCAGGAATAGAAGTAGTCCCACCCAATATCTTATCAAGCTTGACTAAGTTGGAGGAGTTGTACATGGGCAATACGTCTATTAATTGGGCAGATGTGAATTCTACAGTTGAAAATGAAAATGCTAGCATTGCCGAGCTTCGGAAACTACCCAACTTGACAGCTCTAGAATTACAAATTCGCGAGACTTGGATGTTGCCAAGGGACTTGCAACTGATTTTTGAGAAGCTGAAAAGATACAGAATAGCTATTGGAGATGTATGGGAATGGTCTGACATTAAGTATGGAACCTTAAAGACATTGATGCTCAAACTTGGTACCAACATACATTTGGAGCACGGAATTAAAGCTCTGATTAAAGGTGTTGAGAATTTGTACTTGGATGACGTAGATGGAATTCAAAATGTGCTTTATGACCTAAATGGGGAAGGATTTCCATTGCTGAAACATCTCCACATCCAAAATAATGCAAATGTGAAGCACATTGTTGACTCTAAGGAGAGGAATCAAATCCATGTGTCCTTTCCCATCTTGGAAACTCTGCTACTTGATAATCTTAAAAACTTAGAAAATATATCTCATGGTCCACTTTCAGCTACTTCTTTTGAAAGTCTTAGTGTTATCAAAGTCAAAAGTTGTTTCCAATTAAAATATCTTTTCTCCTTTACAATGGTTAAAGGACTTTCCCACCTTTCTAAGATTGAAGTTTGTCAGTGCAATTCTATGAAAGATATAGTACTCGAAGACAACAGTTCAAGTGCAAATAATGAAAAAATTGAGTTCCTTCAATTGCGTTCTCTGACTCTAGAACATTTGGAGACACTCGATAATTTCTTCTCTAATTATTTGACACACTCTAGAAGTAAGCAAAAGTATCAAGGTTTGGAACCTTATGTTTCTTCTACACCATTTTTCAATGTCCAGGTTGCATTTCCTAATTTGGATACCCTTAAATTGAGCTCACTCAATTTGAATAAAATTTGGGATGATTATTCCACGTACAACTTGACTAGTTTGATTGTGGAGAGTTGTGGCGGGTTGAAGTATTTATTCTCTTCTACGGTGGTCGGAAGTTTTAAGAACCTCAAACACCTTAAAATAAGTAATTGTCCTTTGATGGAAGAAATAATATCTAAAGAAGAGGGAAACAATCCATTGAATGAGGTTCCTTTCTTGAAATTAGAGAAAATAATATTGAAGGATATGGACAACTTGAAGACAATATGGCACCACCAATTTGGGTCATTGAAGTTGTTGCATGTGAGCAATTGTAAAAGAATTGTGGTAATTTTTCCTTCTTCAATGCAAAAAACTTATAACAAATTAGAGATGTTGGAGGTTACAAATTGTGCTTTGGTGGAAGAAATATTTGAATTGACTTTCAGCTGTATAGAGGATACAACACATTTGAAAGAAGTTACAATAATTGGATTGCCGAAGTTGAAAAAGATATGGAGTCGGGATCCTAAAGAAATTCTTAGCTTTCAAAATCTAACAGATGTGCAACTAATTTATTGTGAAAGTTTGGAGTATCTATTACCATTTTCTGTAGCCACTACTAGTTGTTCACTTCTCAAAGAACTTGTGATAAAAGATTGTGCAAGCTTGAATAGAATTGTTGCAGAGGAGAAAGAATCTAGGGTGTGTGCATGTCCCATATTTATGTTTAATCAACTGAGTACTCTAGTGCTTTGGAACTCGAACCAACTCAAGTGTTTCTATGTTGGAGAGCATACTCTATCATGTCCATCTTTGAGGAAAATTGATGTTTTCAAATGTTCAAAATTGAACTTGTATAGAACTCTTTCCACATGCAGCTCTAAAAGTAGTTTTCAACATGACAAACTCTCAGTCGTAACTCAACAACCACCTTTCATCGCCGAAGAGGTTATTCCAAACTTGGAGAGGTTGAGGATAAAACAAAAGGATGCTGACATGATATTGCAAGCCCAAAACTCAAGTGCCCTCTTTACCAAACTGACCTTTCTTGGTTTAGGATTTTATAACAATGAAGACTCTACATTTCCTTATTGGTTTCTTAATAATGTGCATACTCTTGAGGTGTTAGTTGTTGAGTGGAGTCGCTTCAAGAAGATTTTTCAAAACGAAAAACAAACAAGTGAGAAGACTCATACTCGGATCAAAATTCTGGAATTGAGTGAATTACATAAACTTCAACAAATATGTGAGGAAGGATTTCGAATTGACTCAGTTCTTGAGTTCCTTGAACAATTATGGGTTGCTAACTGTTCTAGTTTGACAAATTTGTTGCCTTCCTCTGTCACCCTTAATCATCTGAATTATCTAGAGATAACAAGTTGCAATGGTCTAAAAACTTTAATTACAACTCCTACGGCACAGAGTTTGGTCAAACTCACAAGACTTAAGATAAGAGATTGTAAATCACTTGAAGAAATAATTACCGGAGTAGAAAGTGTTGACATTGCATTTGTTAGTTTAGAAGTTTTGATGTTGGAATGTTTGCCAAGCCTCAACAAATTTTGCTCTAGCAAGTTCTTCTTGAAGTTTCCATTGTTGGAGAAAGTAATTGTGAGAGAATGTCCTTACATGAAGATATTTTCAGAAAGAAACCCAAGTACACCAAATCTTCGAAAAGTTAAAATTGCAGAAAATGAAGAGGAATGGCATTGGAAGGGAAACCTAAATGATACAATAAAAAAAATGTTTGAAGAAAAGGTTGCATTTTCTAAATTCAAATATTTAGCTTTATCAAACCACCCTGTGCTAAAGGATTTATGGTACGGCCAAGTGGATCATCAGAATGTATTTTGCAATCTGAAACATCTAGTGGTGCAAAGATGTGATTTCTTATCACATGTACTTTTTCCATCAAATGTTGTTCAAGTGCTACATAAATTGGAAGAACTAGAAGTGAACAACTGTGATTCATTAGAAGCCATATTTGATGTTAAAGGTATGAAGTCTAATGAATCAATATTGATAAAACAAAGCAGTCAATTGAAAACGTTGACTTTGTCTTGTTTATCAAACTTGGAGCACATATGGAACGAGGATCCTCATGAAATTATGAACTTTGGAAACCTATGCTCGGTGGATGTTTCTTCGTGCCAAGGCTTGTTATACATCTTTTCATTGTCCATGTGCCAAGATCTTGAAAATCTTGAAATGCTTGAGATAGATTCTTGCGGAGTCGAGGATATTGTTGCAATGAGAGACGGATCAATGGAAATTAGTTTAAATTTCCCCCTACTAAATACATTGGCACTAGGCGATTTGACAAAACTAAAGAGTTTCTATCAAGGAAAACATACTTTAGAATGCCCTTCATTGAAGATTTTGAATGTATGTCGTTGTGAAACATTGAGAATGTTTTCCTTCAACAATTTAGACTTGCAACAACCTGAGTATTTGGTGGATGAAAGTTCCCAACAAGCCCTTTTTTCTATTGAAAAGCTAAGCACCAACCTGGAGGAATTGACGATAAATGCAAAGGATGCCTTTAGAATGTTGAATGATTACTGTCAAGAAAATATCTTTCCTAAAATACAACGTCTTCGTTTGCAACGCTTTGATGAAACTCCAACTGTTTTTTTGAATGATTTCCATGCAATATTACCTAATCTAACAACTCTTCAATTGCGTAATAGTTGTTTTGAAACATTATTCCCTTCAAAAGGAACTCCTGGCAATTTCAATGATGAACTTTCTAAGCAAATAAAAGAGTTGTGGCTTTATGAATTGGAAAAGATGAAGTATATTTGCCACGAAGATTTTCCATTGAATCTTGAAGATTTATACGTAAGTAGTTGTCCAAGTTTGATATGCTTGATACCATCGTCCACATCTTTCACAAATATGACGACTTTGGAGGTGAATGATTGCAAAGAGTTGTTTTACTTGATAACATCTTCAACAGCTAAAAGCTTAGTTCAGCTCAGAGAATTAAAAATAAAGAAGTGTGAGAAGATGTTGGATGTTGTGAAGATTGATGATGAAAAAGTAGAGGAAGACATCATATTTGAAAATTTGAAAATCTTGAAGTTCATTACTTTGTTAAGTTTAAGAAGCTTCTCAAGTGGGAAACAAACATTCATATTCCCATCTTTGGTGCGTTTTGTTGTTAAAGGATGTCCTCAAATGAAGAATTTTTCATTAGGAGTCACACAAGCACCATGCTTGACAGAAATTGAAGTTGAAGAGGAAAATATACGATGGAAAGGTGATCTTAACACAACTATTGAACAATTGTTCATAGAAAAGCAAGCCCCACGTTGTGATGGGACCATCGTATCATCATATTCCCAAGATGATGAGATCGCATGTGAAGATGGTATCGATGTAGAAGCTAAGGAGTGA 6207 0.3602 MDILISVVGKVSEYTVAPIGRQASYLIRYKANFKTLADDVKEIDDARQRMMILVEEERRNGKTIFPGVETWITNVDEVIEKATQLQNDPRHANLRCSAWPFPNLISRHQLSRKSTKLAKDVVQFKEKRFSGPLGFLPALDGVASSSSTRGGEKYETRETLKQEIMEALKDPNSRNIGVYGLGGVGKTTLVKEVSQIAKQHKLFDEVVTTHVSQNPDLKTIQGEIADTLGLRFPDETIQGRADRLRQRIKKEKSILIVLDDIWTVIDLKNVGIPFGDEHNGCKLFMTSRSQNVLVQMDVPKDFTFRLELMSEKETWSLFQFMAGDVVNNRDLKDVAIQVAQKCAGLPLRVVMVARAMRNKRDVHSWNDALRKLQSNDHAGMDTLTYSALELSYDALESDEVRDLFLLFALLLENSREYYLEVAMGLDILKHVNTMDDARNRHYAIIKSLEETCFLHESKTSGYIAMHDFVRDFATSIASRDKHVLLIKFADEWPTIGLLNRCTQIILDSYHHMHELPQMIDCPSNKLFYLKSKDRSLEIPDAFFEGMKNLTVLDLTYLTLHSLPTSFRFLTGLKSLFLDFCVLENMNAIEALQNLEILSFWKSSMIKLPSEIGRLTKLRMLKLSHSGIEVVPPNILSSLTKLEELYMGNTSINWADVNSTVENENASIAELRKLPNLTALELQIRETWMLPRDLQLIFEKLKRYRIAIGDVWEWSDIKYGTLKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLYDLNGEGFPLLKHLHIQNNANVKHIVDSKERNQIHVSFPILETLLLDNLKNLENISHGPLSATSFESLSVIKVKSCFQLKYLFSFTMVKGLSHLSKIEVCQCNSMKDIVLEDNSSSANNEKIEFLQLRSLTLEHLETLDNFFSNYLTHSRSKQKYQGLEPYVSSTPFFNVQVAFPNLDTLKLSSLNLNKIWDDYSTYNLTSLIVESCGGLKYLFSSTVVGSFKNLKHLKISNCPLMEEIISKEEGNNPLNEVPFLKLEKIILKDMDNLKTIWHHQFGSLKLLHVSNCKRIVVIFPSSMQKTYNKLEMLEVTNCALVEEIFELTFSCIEDTTHLKEVTIIGLPKLKKIWSRDPKEILSFQNLTDVQLIYCESLEYLLPFSVATTSCSLLKELVIKDCASLNRIVAEEKESRVCACPIFMFNQLSTLVLWNSNQLKCFYVGEHTLSCPSLRKIDVFKCSKLNLYRTLSTCSSKSSFQHDKLSVVTQQPPFIAEEVIPNLERLRIKQKDADMILQAQNSSALFTKLTFLGLGFYNNEDSTFPYWFLNNVHTLEVLVVEWSRFKKIFQNEKQTSEKTHTRIKILELSELHKLQQICEEGFRIDSVLEFLEQLWVANCSSLTNLLPSSVTLNHLNYLEITSCNGLKTLITTPTAQSLVKLTRLKIRDCKSLEEIITGVESVDIAFVSLEVLMLECLPSLNKFCSSKFFLKFPLLEKVIVRECPYMKIFSERNPSTPNLRKVKIAENEEEWHWKGNLNDTIKKMFEEKVAFSKFKYLALSNHPVLKDLWYGQVDHQNVFCNLKHLVVQRCDFLSHVLFPSNVVQVLHKLEELEVNNCDSLEAIFDVKGMKSNESILIKQSSQLKTLTLSCLSNLEHIWNEDPHEIMNFGNLCSVDVSSCQGLLYIFSLSMCQDLENLEMLEIDSCGVEDIVAMRDGSMEISLNFPLLNTLALGDLTKLKSFYQGKHTLECPSLKILNVCRCETLRMFSFNNLDLQQPEYLVDESSQQALFSIEKLSTNLEELTINAKDAFRMLNDYCQENIFPKIQRLRLQRFDETPTVFLNDFHAILPNLTTLQLRNSCFETLFPSKGTPGNFNDELSKQIKELWLYELEKMKYICHEDFPLNLEDLYVSSCPSLICLIPSSTSFTNMTTLEVNDCKELFYLITSSTAKSLVQLRELKIKKCEKMLDVVKIDDEKVEEDIIFENLKILKFITLLSLRSFSSGKQTFIFPSLVRFVVKGCPQMKNFSLGVTQAPCLTEIEVEEENIRWKGDLNTTIEQLFIEKQAPRCDGTIVSSYSQDDEIACEDGIDVEAKE 2068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00221 2068 Gene3D - 308 396 IPR042197 -
Vifa3g00221 2068 Coils Coil 1766 1786 - -
Vifa3g00221 2068 SMART AAA_5 172 310 IPR003593 GO:0016887
Vifa3g00221 2068 SUPERFAMILY RNI-like 1101 1349 - -
Vifa3g00221 2068 SUPERFAMILY L domain-like 465 900 - -
Vifa3g00221 2068 Gene3D Ribonuclease Inhibitor 1764 1945 IPR032675 -
Vifa3g00221 2068 Gene3D Ribonuclease Inhibitor 1053 1170 IPR032675 -
Vifa3g00221 2068 SUPERFAMILY RNI-like 1354 1610 - -
Vifa3g00221 2068 SUPERFAMILY RNI-like 1768 2000 - -
Vifa3g00221 2068 PRINTS Disease resistance protein signature 342 356 - -
Vifa3g00221 2068 PRINTS Disease resistance protein signature 980 996 - -
Vifa3g00221 2068 PRINTS Disease resistance protein signature 248 262 - -
Vifa3g00221 2068 PRINTS Disease resistance protein signature 175 190 - -
Vifa3g00221 2068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 406 IPR027417 -
Vifa3g00221 2068 Gene3D - 142 301 IPR027417 -
Vifa3g00221 2068 Pfam NB-ARC domain 158 392 IPR002182 GO:0043531
Vifa3g00221 2068 SUPERFAMILY RNI-like 934 1163 - -
Vifa3g00221 2068 Gene3D Ribonuclease Inhibitor 501 999 IPR032675 -
Vifa3g00221 2068 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1582 1742 - -
Vifa3g00221 2068 FunFam Probable disease resistance protein At1g61300 143 301 - -
Vifa3g00221 2068 SUPERFAMILY RNI-like 1615 1778 - -
Vifa3g00221 2068 Gene3D Ribonuclease Inhibitor 1435 1750 IPR032675 -
Vifa3g00221 2068 Gene3D Ribonuclease Inhibitor 1171 1434 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00221 Vifa-Chr3 20003237 20011528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00221 174 480 WRKY Transcription Factor Family AT5G45050 24.051 3.87e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00221 - - psat:127092588 2636.68