Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00215 ATGGCAGAAACAAAGGAAGCATCAAGTTCGGAGATGTCTCTGAAAGATCAAGGAAACGAGTTTTTCAAGTCCGGCAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATAAAAAAAGACCCTTCAAATCCCACTCTTTATAGTAACCGTGCTGCAGCATTGCTGCAATTGGATAAGCTTAACAAAGCTCTCGATGATGCTGACATGACTATTAAATTAAAACCCCAATGGGAAAAGGGACATTTCCGAAGAGGATGCATATTGGAGGCCTTGAAACGATATGATGATGCATTAGCTTCCTTTCAGATAGCTTCGCAGTATAACCCACAAAGTCAAGAAGTATCAAAAAAGATAAAGAGGATAAACCAACTAGCGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCAAATGTTGACATGGCCAAACATTTAGATACATTGAAACATGAATTGTCTGAAAAGTATGGATCTGAAGAAAACTGGAAAGACAAGTTCTCGTTCCTTGTTGAGACCATGGAAACTGCTGTAAAATCATGGCATGAAACTTCTTCAGTGAATGCTAGAGTTTACTTTCTCCCTGACAAAGAAAAGACACAGACCGATAAATATCCCCCTATTGTGAACATTGATAAGGCATTTGAAACACCAGAAACACACAGCAGCTGCTTTTCATTTCTTAGGCAGTATGCCGAGGAGTCTTTCTCCGAAGCAGCCTGCTTAGTGACTGCTAAAAACATCATTGCTTATCCACAGGTCTGGAAAGGCCAAGGATCAAGGAAATGGAAACATGCACAGAATGATGGTTTCTTTGTTCAGTTTGAGTCTCCTTCCGTGAGAAAATTGTGGTTTATTCCCAGCTCGAATGAGAAGGGACAGACACTGTGCAGGGATCCAGAAGTTTTGGACATTGGTTCTCATGAAGTCGTTCCTCGCTTGTTCAAAGAAAAGACATCCCGTTCTTAA 975 0.4103 MAETKEASSSEMSLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLYSNRAAALLQLDKLNKALDDADMTIKLKPQWEKGHFRRGCILEALKRYDDALASFQIASQYNPQSQEVSKKIKRINQLAKDSKRAQEVENMRSNVDMAKHLDTLKHELSEKYGSEENWKDKFSFLVETMETAVKSWHETSSVNARVYFLPDKEKTQTDKYPPIVNIDKAFETPETHSSCFSFLRQYAEESFSEAACLVTAKNIIAYPQVWKGQGSRKWKHAQNDGFFVQFESPSVRKLWFIPSSNEKGQTLCRDPEVLDIGSHEVVPRLFKEKTSRS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00215 324 FunFam serine/threonine-protein phosphatase 5 10 124 - -
Vifa3g00215 324 Pfam TPR repeat 18 58 - -
Vifa3g00215 324 Gene3D Tetratricopeptide repeat domain 11 125 IPR011990 GO:0005515
Vifa3g00215 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Vifa3g00215 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Vifa3g00215 324 SMART tpr_5 79 112 IPR019734 GO:0005515
Vifa3g00215 324 PANTHER TPR REPEAT CONTAINING PROTEIN 1 319 - -
Vifa3g00215 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vifa3g00215 324 SUPERFAMILY TPR-like 13 122 IPR011990 GO:0005515
Vifa3g00215 324 Pfam Tetratricopeptide repeat 80 111 IPR013105 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00215 4 105 U-box Gene Family AT3G07370 29.412 4.74e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00215 - - gmx:100790717 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00215 3 19374620 19379621 Vifa3g00215 3 19374620 19379621 ECH