Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00214 ATGGGGAAGACAAGCAAATGGATTAGGAATCTTTTGAAAGGGATGAAAGGCAAAGAAAAAGAGAAGGAAGATTGTGGAAATGGAACAGAAAATCCAACTACTCCAAACTCAGGGACGCCGAAGGAGAAGAGAAGATGGAGTTTCAGAAGATTATCAGCTTCCAAGGAAGTTCATGTTGCAGAATCAAGTGTCACTTCTTCAGTGAATTTACAAACTGTCATGGATTCGCAGAATTATCAGAGGAAGCATGTCATGGATGTTGCTGCTGCTGATGGTGTGGTCTTCTTGAGTTCTTGTTCCAATGGAGGAACTAGAAGGAGTATTGAAGTGGCTTCTGCTATTAAAATTCAATCTGTCTTTAGATCTTACTTGGCGAGAAAGGCATTGTGTGCTCTTAGAGGAATAGTGAAGCTGCAAGCACTAGTAAGAGGTCATTTAGTGAGAAAACAAGCAACTGAGACACTAAGATGTATGCAAGCTTTGGTCTTAGCACAAGCAAGAGCCTGTGCTCAAAGGGCTAGAATGTTATCAGAAGAAAAGGCTAATCAAAAGCATGCAACCTACAGAAATGCCACAGAGGAGAGCTTATTCATGCAAATGTATAATGAAATGGAAAGAGGGTTAGAAGAGAATATAAAGACAGTAGAGATGGATGTTTGTGAATCCAAAGGTAACTTAAGAAACAGAAACAACACTACAAATCATGAACAGCATGGATTCTCTGAACATAGACATTCAGCATATTATTCACCAAATGCTTCATACTCAAAGAAAGAAAACTACAAAGTATCACCTACACCATCCGCACGAACCGATTCAAGTCCAAAAGCATGCAGTGGATATTTCGAGGACGGTTACTTCAGTACAGCACAGAACAGTCCCTATTACTACTCAGCAGTTTCAAGAGCAGATGATTCAAAGCTTCCTTTCTCTTTCACTAGACAATCCTATGAAGAATCCATGTCCAATGAGTATCCATTATTTCCAAATTACATGGCTAACACAGAATCATCAAGAGCTAAAGTAAGATCACAGAGTGCACCAAAACAAAGGCCGGACTCGTACGAAAGGCAACCGAGTCGGCGAAGAGCATCTGTGGAAGGAAGAAATGTTCCAAGGCCAGTGAGGATGTTGAGATCATCTTCACATGTTGGTTCCACTGCACAAAACTATCAATATCTATGGTCTGTAAAGCTTGATAAGTCCTCGTCCTCACTCAATGACAATGAGTGTGGCTCTACAAGTACAGTACTAACAAACTCTAACTATTGCAGATCTCTTGTTTCATATAATCCTCATGGACCAAGCTACCGATAA 1317 0.4039 MGKTSKWIRNLLKGMKGKEKEKEDCGNGTENPTTPNSGTPKEKRRWSFRRLSASKEVHVAESSVTSSVNLQTVMDSQNYQRKHVMDVAAADGVVFLSSCSNGGTRRSIEVASAIKIQSVFRSYLARKALCALRGIVKLQALVRGHLVRKQATETLRCMQALVLAQARACAQRARMLSEEKANQKHATYRNATEESLFMQMYNEMERGLEENIKTVEMDVCESKGNLRNRNNTTNHEQHGFSEHRHSAYYSPNASYSKKENYKVSPTPSARTDSSPKACSGYFEDGYFSTAQNSPYYYSAVSRADDSKLPFSFTRQSYEESMSNEYPLFPNYMANTESSRAKVRSQSAPKQRPDSYERQPSRRRASVEGRNVPRPVRMLRSSSHVGSTAQNYQYLWSVKLDKSSSSLNDNECGSTSTVLTNSNYCRSLVSYNPHGPSYR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00214 438 Gene3D - 109 162 - -
Vifa3g00214 438 MobiDBLite consensus disorder prediction 336 353 - -
Vifa3g00214 438 Pfam Protein of unknown function (DUF4005) 314 368 IPR025064 -
Vifa3g00214 438 PANTHER IQ-DOMAIN 5-RELATED 1 367 - -
Vifa3g00214 438 MobiDBLite consensus disorder prediction 224 244 - -
Vifa3g00214 438 SMART iq_5 108 130 IPR000048 GO:0005515
Vifa3g00214 438 SMART iq_5 131 152 IPR000048 GO:0005515
Vifa3g00214 438 Pfam IQ calmodulin-binding motif 133 150 IPR000048 GO:0005515
Vifa3g00214 438 Pfam IQ calmodulin-binding motif 111 129 IPR000048 GO:0005515
Vifa3g00214 438 MobiDBLite consensus disorder prediction 354 369 - -
Vifa3g00214 438 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Vifa3g00214 438 MobiDBLite consensus disorder prediction 12 27 - -
Vifa3g00214 438 MobiDBLite consensus disorder prediction 1 45 - -
Vifa3g00214 438 MobiDBLite consensus disorder prediction 336 383 - -
Vifa3g00214 438 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00214 Vifa-Chr3 19371497 19373776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00214 1 427 IQD Protein Family AT4G14750 43.013 1.39e-85 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00214 - - gmx:100817667 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00214 3 19371497 19373776 Vifa3g00214 3 19371497 19373776 ECH