Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00203 ATGGCCACGCCAACAACAGAAGATAACATCTCACGTGGTTTTCACATGCACGACACGGTCATGGTCACGGACGAAGACGAAGATGTACTTGATGAGAATCGAGGAAGAGGAGGAGAAGATGAAGAAGAAGAAGAGCAAGCAGTGAAGAATTCTTCAGGTATTAGTCGAGTTGTGGACCCAAGAGAAAAATGGGTGCAAGAATGGAACAAAGTGTTTTTGCTAGTATGCGGAGCAGGGTTGTTTGTGGACCCACTGTTCTTCTACGCCCTTTCCATCAGCGACTCGTTTATGTGCCTTTTCATCGACGGCTGGTTCGCCGTCACTGTAACGGTGCTCCGTTGCATGACTGACGCCTTCCACCTCTGGCATATCTTCCTCCGCTTTAAGATGGCAAAACGCAGCTCATTCGTTTTCTCCCGAGATTCTGCCGGAGCTGATCCCCGCTGCTCCGTCGCTCTTGCTTATCTTAAGTCCCGCCGCGGCTTCTTCTTTGATCTCTTCGTTATTCTTCCTATACCTCAGATTGTGCTTTGGGTGGCAATCCCTGCTCTGTTGGAGCAAGGTTCAGTTACGTTGGTGATGACAATATTATTAATTGTATTTCTGTTCCAATACCTTCCCAAAATTTATCATTCAGTATGCCATCTGAGACGTACACAAAACCTCTCTGGCTACATTTTTGGAACTGTTTGGTGGGGTATTGCTCTTAACATGATCGCCTACTTTGTAGCTTCCCATGCTGCAGGGGCATGTTGGTACTTGTTGGGGATCCAAAGAGCAACGAAATGTCTGAAAGAGCAATGTCTGAAAACAAATGGTTGTGGCATAAAAATATTGTCTTGTCATAAGCCAATATATTATGGAAGTGCAAGTTTGTTGAATAAAGACATTGGAAGAATGTGGTGGGCAGAGAACAGGGAAGCAAGGTCTACATGCATAAATGGTCCAGATAACTTCAACTATGGAGCTTATAAATGGACTGTTCAACTTGTCACTAATGATAACAGACTTGAAAAGATTCTTTTTCCTATCTTTTGGGGCCTAATGACTCTCAGCACTTTCGGGAACCTAGAAAGCACAACGGACTGGCTAGAAGTAGTTTTCAATATCTTAGTCTTGACCAGTGGCCTTCTTCTTGTGACTATGTTGATAGGAAACATCAAGGTGTTTTTGCATGCAACGACATCTAAGAAACAAGTGATGCAATTGAAGATGAGAAACGTTGAATGGTGGATGAGGAAAAAACACTTGCCGCAGGGGTTTCGACAACGTGTACGTAACTATGAAAGACAACGTTGGGCTGCTATGCGTGGGGTTGATGAATGTGAAATGACAAAAAATCTTCCTGAAGGTTTAAGAAGAGACATCAAATATCATCTTTGTTTGGATTTGGTCAGACAGGTGCCATTGTTTCAACATATGGACGAGCTGGTTCTAGAGAATATATGTGACCGAGTCAAATCTCTCATATTCACCAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAAAGAATGCTATTTGTGGTGAGGGGTCACCTTCAAAGTAGCCAAGTATTAAGAGACGGGTTAAAAAGCTGCTGCATGTTAGGACCAGGAAATTTCAGTGGTGATGAGCTTCTTTCATGGTGTTTGAGAAGACCCTTCATTGAGCGGCTTCCACTGTCAACATCAACACTTGTCACACTTGAAACAACAGAGGCTTTTGGTCTTGAAGCAGAAGATGTCAAGTATGTCACACAACATTTCAGATACACGTTTGTGAAGGAAAAGGTCAAAAGAAGTGCTAGGTATTACTCACCAGGGTGGAGAACTTGGGGTGCTGTTGCCATTCAGTTGGCATGGAGAAGGTACAGACATAGGTTGACATTGAACTCATTGTCTTTTATAAGACCTAGGAGACCCTTGTCAAGATGCTCTTCCTTGGGAGAGGATAGGCTTCGACTCTACACAGCTTTATTAACTTCACCAAAGCCTAATCAGGATGATTTTGATTTTTGA 2004 0.4336 MATPTTEDNISRGFHMHDTVMVTDEDEDVLDENRGRGGEDEEEEEQAVKNSSGISRVVDPREKWVQEWNKVFLLVCGAGLFVDPLFFYALSISDSFMCLFIDGWFAVTVTVLRCMTDAFHLWHIFLRFKMAKRSSFVFSRDSAGADPRCSVALAYLKSRRGFFFDLFVILPIPQIVLWVAIPALLEQGSVTLVMTILLIVFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRATKCLKEQCLKTNGCGIKILSCHKPIYYGSASLLNKDIGRMWWAENREARSTCINGPDNFNYGAYKWTVQLVTNDNRLEKILFPIFWGLMTLSTFGNLESTTDWLEVVFNILVLTSGLLLVTMLIGNIKVFLHATTSKKQVMQLKMRNVEWWMRKKHLPQGFRQRVRNYERQRWAAMRGVDECEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGLKSCCMLGPGNFSGDELLSWCLRRPFIERLPLSTSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWGAVAIQLAWRRYRHRLTLNSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00203 667 Gene3D Helix hairpin bin 395 461 - -
Vifa3g00203 667 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 45 627 - -
Vifa3g00203 667 Pfam Cyclic nucleotide-binding domain 491 578 IPR000595 -
Vifa3g00203 667 Pfam Ion transport protein 68 387 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa3g00203 667 CDD CAP_ED 470 576 IPR000595 -
Vifa3g00203 667 SUPERFAMILY Voltage-gated potassium channels 60 391 - -
Vifa3g00203 667 FunFam Cyclic nucleotide-gated ion channel 1 397 461 - -
Vifa3g00203 667 MobiDBLite consensus disorder prediction 23 54 - -
Vifa3g00203 667 MobiDBLite consensus disorder prediction 23 49 - -
Vifa3g00203 667 ProSiteProfiles cAMP/cGMP binding motif profile. 470 549 IPR000595 -
Vifa3g00203 667 Gene3D Jelly Rolls 468 586 IPR014710 -
Vifa3g00203 667 FunFam cyclic nucleotide-gated ion channel 4 468 586 - -
Vifa3g00203 667 SUPERFAMILY cAMP-binding domain-like 396 584 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00203 Vifa-Chr3 16860590 16875848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00203 54 666 Ion Channels AT5G54250 76.737 0.0 992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00203 K05391 - gmx:100783341 1102.81