Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00202 ATGGTTGGATTGGAACTCATACCGATAGGTACAATTTTGGCTGTTCTAACCAGCCATGTTGTAAGAACAGCTAGTGCGGCAAAAGATGTTCTTATCGACAAAGAAAGTTTTAACGTCCTTTCGAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAGTTACAGCTTCAGGAATTGAATGAGTCACAGGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTAAAACAAGCAAGTAATTTGGTCGAGAAGTACAAGAACACCGGTCGTTTTTACTTACTTATGAAGTGTCGTTACATAGTCAAGGAAGTTGAACAAGTCATTAGGGATATAGGAAGGTCTCTAGCTGCATTGTCTCTTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAAGTCAACAGACTACAGAGTGAGATGCAAAGGGCCGAGTTTGAGGCTTCGCAATCTCAGCTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAACTAGATCAGGCTTTTGCAAACAATATGCTCGAAGAGATAGCAAGGGCAGTCGGGGTGCCAGTGGAGCCTTCAGAGATCAGCAAAGAGATAGCCAGCATTAGGTGGGAAAAAGAAGAAGCTTTAAACAGGAAAGAAAGAGCAGAAGTTATATTTTTGGAGCAGATCATTTTGTTACTCTCTCAAGCTGATGCAGCAAGTGATTACGAAGAAGTTAAGAAGCAATATTTTCAAAGGGTTCAGGTAATAGAGGGATATAGTTCAAAGGAAAAATATATTCCGCCCCTTAATTCTTTCCTTTGTTCGATAACTGAAGCTGTTATGGTAGATCCTGTCAGTCTTTGCACCGGTACTACATGTGAGAGATCTGCCATCGAAGCTTGGTTTGATGATGGCAATATGACCGACCCAGAAACTGAAGAGGTTCTTGAAGATACTACCTTAAGGTCAAACATCCGGTTAAGAGATTCCATAGTAGAGTGGAGAGAACTTAATTACTGCTTTAGAATAAAGTCTATCAGGGAAAACTTATTATCTAATTCTGGCTTATTATTGCATGAGTCCTTGAGTCAGATGCAGACTCTCATAAGAGAGAATTCAATTAATAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTATCATTTCCATCCTTGGGAACTCTGATTCTATAGATGTCAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTTGAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGATGGGGTAACATTATTTCATGCTTACACAATGACTCTAGAGTAATAAAGGAAGCAATTGATTTGCTCTATGAGTTGCTTCAAGACCGTTCTGGTTGGAATAGAAGTTTCTGCAAAAAACTTTCTGAGCATCCCAGCACAGTTCATTACCTTGTTACCATTCTAAAGGGACCTGTCAGCGATTCAACTGCGATTGCAGAAAAGATTTTGACGGAGCTTTTTGAAATAGATGAGGAAAACATTTCATGTGCTGCTAAGTTTGGCTGGTACAAAGCACTTGTTGATCGCATGATTCAAGGATCGGAGTCTTCAAGAATGTCAATGGCTAAAGCTATAATCAAATTGAATTTGGAAGAATCAAATCTAAAACTCCTAGGCGAGAAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCCGGAAGCATTGAATCGAAAGAATTGTCATTATCATCATTGCTCAAACTAGCAGGAGTTCATGGCAATAAGGGAATTATTGCTGCATATGGAGGCGTCCCTATTCTTCTAGATTTAACGTTCTCCCTTCGGACACGGGCGTTCATTAGCATTAAATGCTTTGAAATCCTTGAGAAGCTTTCTTCTGATGATGGAATTCGTTTCTTTGTTGACGGAGAAGGGAAACAACTCGAGTTAGATAACATTATCACCAATTTGCTAGCTCTGCAGCAGCTTCCTAACACAGCTAAGTACTTCCGTAAGCCTGCATTGCGTGCTCTTCTTGGCATTTGCAAGTTTGAAACAGGTTTAGTTAAAAAGGCTGTTCTGGCAGCTCATGGTGTATCACTAATTCTTCCCCTTCTTGACCACTCTGATTCAGAAATCAGGGAAACTGCCATTAGTCTTCTCTTTCTTTTCTCGCAACATGAACCAGAAGGAGTTGTTGAATACCTCTTCAGGCCTAGAAGACTTGAAGCTTTAGTCGGGTTTCTTGAGAGTGACGAAAATAATGATGTACAAGTAGCTGCTACTGGTTTACTAGCTAACCTTCCTAAATCCGAACGAAAACTCACTATGCAATTAATTGACTTAGGTGGCCTTGATGCAATTATTAACATTTTGAGAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTTAGATTCACAGATCCCACGGATATCACGTCACAGCGCGATTTGGTTAGACGGGGAATATATCCTTTGTTAGTAAAATTTCTCAATACTGGTTCAATGACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCCATGAGCACTCCAAAGCTCACAGTTGTTTCAAAACCAACGTTTTGCAGTTGTTTTCGATCATCACAAGCTCCTTTATGCTTGGCACACGGAAGTGTTTGCAACGTGAATTCCACATTTTGTCTTTTAGAAGCAAACGCTCTGCCTGGCTTGATCAAGCTGTTACAAGAGGAGGTTCATGCAACTGCTTATGAAGCTATACAGACACTTTCCACATTGGTTATAGAAGACTTTCCTCATAGAGGAGCTCGCGTTTTGCATGAGTCAAATGCAATGAGACCGCTATTGAAAATTTTGAACTGGGGAAGTGATTCTCTTAAAGCAGAAGTTCTTGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGGATATTATGGATCAACGGCTAGATCACGTCTATTCCATCTCACTGGGATGAATGTTTATGGGGACGGCCACCTGAGGAGAAAAGCTGCCAGGGTACTGTCATTGCTGGAACGCTCGTCGAGATCGTCATCACATTTAGTCACGGGAGTTGTGTTGAGTGAGAATCTACGCCTATGA 3066 0.407 MVGLELIPIGTILAVLTSHVVRTASAAKDVLIDKESFNVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKQASNLVEKYKNTGRFYLLMKCRYIVKEVEQVIRDIGRSLAALSLANTEVLSRISDQVNRLQSEMQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANNMLEEIARAVGVPVEPSEISKEIASIRWEKEEALNRKERAEVIFLEQIILLLSQADAASDYEEVKKQYFQRVQVIEGYSSKEKYIPPLNSFLCSITEAVMVDPVSLCTGTTCERSAIEAWFDDGNMTDPETEEVLEDTTLRSNIRLRDSIVEWRELNYCFRIKSIRENLLSNSGLLLHESLSQMQTLIRENSINKDWISIGELTDIIISILGNSDSIDVKMKILITLKDAVEGHARNKEKVVESQGWGNIISCLHNDSRVIKEAIDLLYELLQDRSGWNRSFCKKLSEHPSTVHYLVTILKGPVSDSTAIAEKILTELFEIDEENISCAAKFGWYKALVDRMIQGSESSRMSMAKAIIKLNLEESNLKLLGEKGVIPPLLEMLSGSIESKELSLSSLLKLAGVHGNKGIIAAYGGVPILLDLTFSLRTRAFISIKCFEILEKLSSDDGIRFFVDGEGKQLELDNIITNLLALQQLPNTAKYFRKPALRALLGICKFETGLVKKAVLAAHGVSLILPLLDHSDSEIRETAISLLFLFSQHEPEGVVEYLFRPRRLEALVGFLESDENNDVQVAATGLLANLPKSERKLTMQLIDLGGLDAIINILRNGTMEAKENALSALFRFTDPTDITSQRDLVRRGIYPLLVKFLNTGSMTAKARAAAFIGDLSMSTPKLTVVSKPTFCSCFRSSQAPLCLAHGSVCNVNSTFCLLEANALPGLIKLLQEEVHATAYEAIQTLSTLVIEDFPHRGARVLHESNAMRPLLKILNWGSDSLKAEVLGLLEKVFVSKEMVGYYGSTARSRLFHLTGMNVYGDGHLRRKAARVLSLLERSSRSSSHLVTGVVLSENLRL 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00202 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 334 IPR013083 -
Vifa3g00202 1021 SUPERFAMILY ARM repeat 647 999 IPR016024 -
Vifa3g00202 1021 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Vifa3g00202 1021 Gene3D - 852 1016 IPR011989 -
Vifa3g00202 1021 SMART arm_5 408 447 IPR000225 GO:0005515
Vifa3g00202 1021 SMART arm_5 874 914 IPR000225 GO:0005515
Vifa3g00202 1021 SMART arm_5 672 712 IPR000225 GO:0005515
Vifa3g00202 1021 SMART arm_5 714 756 IPR000225 GO:0005515
Vifa3g00202 1021 SMART arm_5 918 958 IPR000225 GO:0005515
Vifa3g00202 1021 SMART arm_5 537 576 IPR000225 GO:0005515
Vifa3g00202 1021 SMART arm_5 757 798 IPR000225 GO:0005515
Vifa3g00202 1021 SUPERFAMILY ARM repeat 336 715 IPR016024 -
Vifa3g00202 1021 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Vifa3g00202 1021 CDD MLKL_NTD 26 142 - -
Vifa3g00202 1021 Coils Coil 127 154 - -
Vifa3g00202 1021 Gene3D - 9 123 IPR036537 GO:0007166
Vifa3g00202 1021 Gene3D - 336 463 IPR011989 -
Vifa3g00202 1021 SUPERFAMILY RING/U-box 247 331 - -
Vifa3g00202 1021 Coils Coil 62 89 - -
Vifa3g00202 1021 Gene3D - 467 849 IPR011989 -
Vifa3g00202 1021 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1007 - -
Vifa3g00202 1021 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Vifa3g00202 1021 CDD RING-Ubox_PUB 265 314 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00202 Vifa-Chr3 16845378 16848703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00202 264 938 U-box Gene Family AT1G20780 26.584 4.79e-38 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00202 - - gsj:114377374 1555.04