Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00201 ATGGATCGGCGGCAACAGTCACCACCGTCGCCACCTCCATCTCCGCCGTCACGAACCATACTCGGAAAATACCAGCTCACAAAATTCCTCGGACGCGGAAACTTCGCGAAGGTTTACCAGGCAACTTCCCTGATAGACGGTTCAACAGTCGCCGTGAAAGTGATCGACAAATCCAAAACGGTGGACGCATCCATGGAGCCACGAATCGTTCGTGAAATCGACGCCATGCGCCGTCTTCAAAACCATCAAAATATCCTCAAAATTCACGAAGTTTTAGCTACGAAAACCAAGATCTATCTCATCGTCGATTTCGCCGGCGGCGGTGAGCTTTTCTACAAACTCTCCCGACGAGGTAGGTTTACCGAGTCCGTCGCTCGTCGGTACTTTCAACAGCTCGTCTCCGCTCTCTGTTTCTGTCACAAAAACGGCGTCGCTCACCGTGATCTAAAACCGCAGAATCTCCTCCTGGACGCCGACGGGAACCTCAAGGTCTCCGACTTCGGTCTCTCCGCGTTACCGGAACAGCTTCAAAACGGTCTCCTCCATACAGCTTGTGGTACTCCGGCGTACACCGCGCCGGAGATTCTGGGCCGCATCGGATACGACGGATCTAAAGCAGACGCTTGGTCATGTGGCGTTATCCTCTACGTACTACTCGCCGGTCATCTCCCGTTCGACGATTCAAATATTCCGGCGATGTGTAAGAGAATCATGCGGCGGGATTTTCAGTTTCCGGAGTGGATTTCGAAGCCGGCGCGTTACTTAATCTATCAGCTACTCGACCCGAACCCTAAAACCCGAATAAAATTAGAAAACGTGTTTGCAAACGCGTGGTTTAAGAAATCGTTAAGAGAAGAACCTGAAGTTAAAGTTTTCGAATCGGAGTTATACAAAAAATACTGTTGCGAAGGTAGCAAGAAACTAGAATTGGGGATGAATGCTTTTGATATAATATCGATGTCTTCGGGTTTGGATTTGAGTGGTTTGTTTGAAACTACGTCGTTTAGGAGTGAAAAGAGGTTTACTTCAAGTGAAGAAATTGGTGTGGTGGAAGAGAAAGTGAAGGAGATTGGAGGGGGATTAGGGTTTAGAGTTGAGATTGGGAAAAATGGAACAATTGGGTTGGGGAAAGGGAAGGTAACTATGGTTGTTGAGGTGTTTAAGATAGTGGATAATTTGTTGTTGGTAGCACTAAAATTGGAGAATGGTGGAATGGAATTTGAGGATCTTCATTGGAATGATTGGAAAATTGGGCTTCAAGATGTTGTTATTTCATGGCATAATCATGAATCAAAATTTCCATGTAACAATGTTGGTGAATCTGAAAGAAACATTGCTTAA 1341 0.4631 MDRRQQSPPSPPPSPPSRTILGKYQLTKFLGRGNFAKVYQATSLIDGSTVAVKVIDKSKTVDASMEPRIVREIDAMRRLQNHQNILKIHEVLATKTKIYLIVDFAGGGELFYKLSRRGRFTESVARRYFQQLVSALCFCHKNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEQLQNGLLHTACGTPAYTAPEILGRIGYDGSKADAWSCGVILYVLLAGHLPFDDSNIPAMCKRIMRRDFQFPEWISKPARYLIYQLLDPNPKTRIKLENVFANAWFKKSLREEPEVKVFESELYKKYCCEGSKKLELGMNAFDIISMSSGLDLSGLFETTSFRSEKRFTSSEEIGVVEEKVKEIGGGLGFRVEIGKNGTIGLGKGKVTMVVEVFKIVDNLLLVALKLENGGMEFEDLHWNDWKIGLQDVVISWHNHESKFPCNNVGESERNIA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00201 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 377 - -
Vifa3g00201 446 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00201 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vifa3g00201 446 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00201 446 FunFam Non-specific serine/threonine protein kinase 15 303 - -
Vifa3g00201 446 Gene3D Kinase associated domain 1, KA1 315 424 - -
Vifa3g00201 446 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00201 446 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Vifa3g00201 446 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Vifa3g00201 446 Gene3D Transferase(Phosphotransferase) domain 1 17 314 - -
Vifa3g00201 446 CDD CIPK_C 313 420 - -
Vifa3g00201 446 FunFam Non-specific serine/threonine protein kinase 17 109 - -
Vifa3g00201 446 Pfam NAF domain 312 366 IPR004041 GO:0007165
Vifa3g00201 446 SUPERFAMILY Protein kinase-like (PK-like) 20 290 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00201 Vifa-Chr3 15901781 15903121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00201 5 428 Miscellaneous Gene Families AT3G23000 56.845 1.77e-167 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa3g00201 Pkinase 5.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00201 K12761 - gmx:100305372 628.246