Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00196 ATGTTTGGAGCTACAGAGAAGTCTATAGTTGATGTTAATGGTGATAAATTGTATGATTATGATACTATTTTTGTTCCGGTTGATAAATTACCTGTTTTGAAACAACCTAGTACTGTTGCTGTTCCTTCTCCGGCACCGAGTCAGAATTCTAATGGTGGTGGTAGTGATGATGATAAGAGTGGAACTGTTAGAGGGTTGGCTATTGGATTGGGGATTTTAGGGTTTTTGTTGATTTTGATTTTGGGGATTTGGTTTTATAGAGAGATTTTGTCTAAGAAGGAGAAGAAAGAGAGGGATATCTATTTGGGAGAGAAAGGGAGAAAGGGGGATGAGTATAAGAAGAAGGGAATGGATGTGAATTTTATGGCTAATGTTTCTGATTGTTTGGATAAGTATAGAGTTTATGCAATTAAGAAGATGAAGTGGAATGCTTATGAAGAGCTCAAAATTTTGCAGAAGGTAAACCATGGGAATTTGGTGAAGTTGGAAGGATTTTGCATTGAACCAGAAGAATCAAATTGCTATTTAGTCTATGAATATGTTGAAAATGGATCTCTCTACTCATGGTTACATGAAGACAAAAACGAAAAGTTGAATTGGACCGGAATAAATGCAATTACCATGCACATTGTAGGAACACAAGGTTACATTTCACCCGAATATCTAACCGACGGTGTCGTGTCGACAAAGATGGATGTGTTTTCCTTTGGTGTTGTGTTGTTGGAGTTGATTTCTGGGAAGGAAGTGATTGATGAGGAGGGAAATGTTTTGTGGGCTAGTGCTATAAAAACATTTGAAGTGAAAAATGAACAAGAAAAAGCTAGGAGACTTAAGGATTGGTTGGATAAGGCTATTTTGAAGGAGACACTTTCAATGGAAAGTTTGATGGGTGTGCTTAGTGTTGCTATTGCTTGTTTGCATAGAGACCCATCAAAGAGACCTAGTATTATAGATATTGTTTATTCACTTACTAAATGTGAAGAGAATGGATTTGAGCTATCTGATGATGGGTTTAGTTCACAAAGATTGGTGGCTAGGTGA 1041 0.3698 MFGATEKSIVDVNGDKLYDYDTIFVPVDKLPVLKQPSTVAVPSPAPSQNSNGGGSDDDKSGTVRGLAIGLGILGFLLILILGIWFYREILSKKEKKERDIYLGEKGRKGDEYKKKGMDVNFMANVSDCLDKYRVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIEPEESNCYLVYEYVENGSLYSWLHEDKNEKLNWTGINAITMHIVGTQGYISPEYLTDGVVSTKMDVFSFGVVLLELISGKEVIDEEGNVLWASAIKTFEVKNEQEKARRLKDWLDKAILKETLSMESLMGVLSVAIACLHRDPSKRPSIIDIVYSLTKCEENGFELSDDGFSSQRLVAR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00196 346 Gene3D Transferase(Phosphotransferase) domain 1 104 205 - -
Vifa3g00196 346 SUPERFAMILY Protein kinase-like (PK-like) 129 326 IPR011009 -
Vifa3g00196 346 Gene3D Transferase(Phosphotransferase) domain 1 206 336 - -
Vifa3g00196 346 MobiDBLite consensus disorder prediction 40 57 - -
Vifa3g00196 346 MobiDBLite consensus disorder prediction 38 59 - -
Vifa3g00196 346 Pfam Protein kinase domain 137 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00196 346 Pfam Protein kinase domain 207 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00196 346 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 134 201 - -
Vifa3g00196 346 ProSiteProfiles Protein kinase domain profile. 75 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00196 Vifa-Chr3 15141417 15143367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00196 137 325 Receptor kinase-like Gene Family AT2G23770 32.510 3.41e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa3g00196 Pkinase 1.3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00196 - - gmx:100802872 439.499