Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00195 ATGAGCCCTCCACAAAGCAATTCAACACAAAACCATAGCTTTCCCATAACCAACTCACATAAGGGACCCTCCATTCACATGCTCATGTTTCCTCAAAATCAACGCTCAAGATTTCATTCTCAAACCAATCTCAACCATCCAAATTCCAGACCAAATGGAAGATGGAATTCAAGGCAACTGAGCTTAGATTGGGGGTTACCAGGAGTAACAGAGGAAGAGGAGAAGAAAATCACACATGGTAGTGTTAAGAACAACAACAAAAGACAATTACCTCAAACTTCTGAGGAATCTGTTTCAATTTCCAAGGTTACAAATGATGAGAATATTGTGGAGAGTTCTTCTGCAGCCCCTCCTGCAAAGGCAAAGATAGTTGGGTGGCCACCAATTAGAACTTACAGGAAAAACAGTTTGCAAGAGGCTGATGTTGGTGGAATCTTTGTGAAAGTGAGCATGGATGGTGCCCCTTACCTTAGAAAGATTGATATAAAGGTCTATGGAGGGTACCCTGAATTACTCAAAGCTCTAGAAACCATGTTCAAGTTGACCATAGGTGAGTATTCTGAAAGAGAAGGTTACAAGGGATCTGAATATGCACCAACTTATGAAGACAAGGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGGCTAAGAATCATGAAAGGCACAGAAGCTAAAGGTTTGGGTTGTGGTGTATGA 726 0.4146 MSPPQSNSTQNHSFPITNSHKGPSIHMLMFPQNQRSRFHSQTNLNHPNSRPNGRWNSRQLSLDWGLPGVTEEEEKKITHGSVKNNNKRQLPQTSEESVSISKVTNDENIVESSSAAPPAKAKIVGWPPIRTYRKNSLQEADVGGIFVKVSMDGAPYLRKIDIKVYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGLGCGV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00195 241 Pfam AUX/IAA family 68 238 IPR033389 -
Vifa3g00195 241 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g00195 241 SUPERFAMILY CAD & PB1 domains 138 230 - -
Vifa3g00195 241 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g00195 241 Gene3D - 138 241 - -
Vifa3g00195 241 MobiDBLite consensus disorder prediction 39 59 - -
Vifa3g00195 241 FunFam Auxin-responsive protein 139 241 - -
Vifa3g00195 241 ProSiteProfiles PB1 domain profile. 144 231 IPR000270 GO:0005515
Vifa3g00195 241 MobiDBLite consensus disorder prediction 83 101 - -
Vifa3g00195 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 60 235 IPR003311 GO:0005634|GO:0006355
Vifa3g00195 241 MobiDBLite consensus disorder prediction 73 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00195 Vifa-Chr3 15094898 15096505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00195 147 237 B3 DNA Binding Superfamily AT2G46530 37.363 8.61e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa3g00195 AUX_IAA 1.6e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00195 K14484 - gmx:100800212 278.1