Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00192 ATGGATCCTTTTTTTCCTGAGAATCTTCTTTTAGGTGATGTTTTTTGGGATGAACAAGAACAACCTCTTCTTTCAACAAGCGACTTTGTTCAAACACAACCTTGTCCTATACAAAATCCAAGTGCTTTTGTTCAATATAGAGACCAACCCAAGATTAGTTTAGGAAAACAAAATTCTTTAAAAGGATCCAATTCACATTCCATGAACAAGAGAATGTTTGCATTTTTGAGAAAAAGTTTGCCCGTAGAGAGAAATAAAGCAGCTGAATGTGAAAGAGAACGAGGTTTCAAACATATGATTAGTGAAAGAATGAGAAGACAAAGACAGAGACAGTGTTGTATCAACTTACATTCAGTTTTACCTCATGGAACCAAAACGGATAATAATTCAGTAGTTCAAACGGCAGCTAAGGAAATTCAAAGGCTGCAAGGATGCAAAGAGGAGTTAGAGAGGAAAAACTTTGTGCTTGAAGGAAATGTTGAAGGAAGAAAATTCCAGCATTTGAGAGTGACATATTCATCTACATCTGGAATTGATTCTATAGTTGAGACACTGAAACTGTTGAAAGGACATGGTGTGGATACTAGAAGGATCAACACAGATTTTTCTCAGCAGGAGTTTTTTGCGGTCTTAGAGATAGAAACTGAGATTGGAGAAAGTGATGTGGAAGAGGCTGTTAGGAGAACACTTGAGGAACTTGAGTGGAAGTTTCATTCTCATGTCCAAGAAGGTTCTGAAAAGCAACTACTACATTCATTTTAA 762 0.3661 MDPFFPENLLLGDVFWDEQEQPLLSTSDFVQTQPCPIQNPSAFVQYRDQPKISLGKQNSLKGSNSHSMNKRMFAFLRKSLPVERNKAAECERERGFKHMISERMRRQRQRQCCINLHSVLPHGTKTDNNSVVQTAAKEIQRLQGCKEELERKNFVLEGNVEGRKFQHLRVTYSSTSGIDSIVETLKLLKGHGVDTRRINTDFSQQEFFAVLEIETEIGESDVEEAVRRTLEELEWKFHSHVQEGSEKQLLHSF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00192 253 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 229 IPR044658 -
Vifa3g00192 253 Coils Coil 132 152 - -
Vifa3g00192 253 Gene3D - 83 158 IPR036638 GO:0046983
Vifa3g00192 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 153 IPR036638 GO:0046983
Vifa3g00192 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Vifa3g00192 253 SMART finulus 99 148 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00192 1 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 35.443 2.90e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00192 - - gmx:100815874 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00192 3 14848242 14849303 Vifa3g00192 3 14848242 14849303 ECH