Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00189 ATGGCCCAATCTCTTTTATTCACAGTGAAGAGACGTGCCCCTGAATTTGTAACTCCATCAAAACCAACCCCTCATGAAATCAAACTTCTGTCAGACATAGATGACCAAGATGGGTTACGTTTTCAAATTCCAGTGATACAATTTTACAAGTATGATCCAAATATGGCAGGGAAAGACCCTGTTGATGTTATTAGAAAAGCACTTGCGAGAACGCTTGTGTTTTATTATCCATTTGCAGGTAGGTTGAGAGAAGGTCCTGGTAGAAAACTTATGGTGGATTGTAATGAAGAAGGTGTTTTGTTCATTGAAGCTGATGCTGATGTTAGTTTGAAGGATTTTGGTGATGCTCTTCAGCCTCCTTTTCCTTGTTTGGATGAACTTCTTTTTGATGTTCCTGGCTCTTCACAAGTTCTTAATACTCCTCTCATGGTTATTCAGGTAACACGTCTGAATTGCGGCGGTTTCATTTTTGCGCTTCGACTAAACCACACAATGGGGGACGCAGCGGGTTTAACGCAATTCATGAGTGCCTTAGGCGAAATATGTCGTGGAATGAAAGAACCTTCAATTCCACCACTGTGGAACAGAGAGATTCTGAATGCAAGAAACCCACCAAGAGTAACATGTAGTCACCGGGAATACGAACAAATACCTGACCCCAAAGGAACCATCATCCCGTTAGACGACATGGCTCACCGCTCTTTCTTCTTCGGCCCCTCCGAACTCGTCGCAATCCGAACACTTCTTCCACCTCACCAACAAAAACGCTCCAACTTTGAAATCTTAACTGCATGCCTGTGGCGTTGTCGCACAATCGCTTTACAGCCAGACGCGGACGAAGAAGTTCGTATAATCTGCATCGTTAATTCACGAAGCAGATTCAATCCACCTTTACCAAAAGGTTTCTACGGTAACGCGTTTGCATTTCCTGTCGCTGTAACAACGGCAGGAAAGCTAATTGAAAATCCAATGGGATACGCATTGGAGTTAGTTCAAAAAGCGAAAGGTGATGTCACTCAAGAGTACATGCATTCTGTTGCGGATCTAATGGTTCTCAAGGGTCGACCTCATTTTACCGTGGTGAGGTCGTTTCTTGTTTCTGATGTGACTCGCGCTGGATTTGGAGATGTTGATTTTGGTTGGGGAAAAGCTGTTTATGGTGGACCGGCTAAAGGAGGAGTTGGTGCTGTTCCTGGTGTTGCTAGCTTTTATATACCTTTTGTAAATGGTAAAGGAGAGAAAGGTTTGGTTATTCCTGTTTGTTTGCCAGCTCAAGCTATGGAGAGGTTTGTTGTAGAGTTGCACAGTGTTCTTAACAATAACAAGGTTAACAAATCTACTAAGGCTGCTCCAGGATCTGCTTTCATTACTTCTTCTTTGTAG 1383 0.4324 MAQSLLFTVKRRAPEFVTPSKPTPHEIKLLSDIDDQDGLRFQIPVIQFYKYDPNMAGKDPVDVIRKALARTLVFYYPFAGRLREGPGRKLMVDCNEEGVLFIEADADVSLKDFGDALQPPFPCLDELLFDVPGSSQVLNTPLMVIQVTRLNCGGFIFALRLNHTMGDAAGLTQFMSALGEICRGMKEPSIPPLWNREILNARNPPRVTCSHREYEQIPDPKGTIIPLDDMAHRSFFFGPSELVAIRTLLPPHQQKRSNFEILTACLWRCRTIALQPDADEEVRIICIVNSRSRFNPPLPKGFYGNAFAFPVAVTTAGKLIENPMGYALELVQKAKGDVTQEYMHSVADLMVLKGRPHFTVVRSFLVSDVTRAGFGDVDFGWGKAVYGGPAKGGVGAVPGVASFYIPFVNGKGEKGLVIPVCLPAQAMERFVVELHSVLNNNKVNKSTKAAPGSAFITSSL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00189 460 Gene3D - 214 432 IPR023213 -
Vifa3g00189 460 Gene3D - 8 213 IPR023213 -
Vifa3g00189 460 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 17 430 - -
Vifa3g00189 460 Pfam Transferase family 9 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00189 Vifa-Chr3 14378769 14380270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00189 40 434 Monolignol Biosynthesis Gene Families AT5G48930 29.736 1.22e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00189 K19861 - gmx:100797017 729.554