Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00180 ATGTTATCGGAGTTAGTGAACTTTCTGAAGGCCTGCTTTCGTCCGGGTTTGGATGGACATGCGCGCACATCGTCGGATTCTGGAGTTCAAGCCAATAACTTGCTGGAGGATCAGAGTCAGATTGAATCGGGTAGTTTGAGCTTGAATGAGTCGGGTCCTTATGGAACCTTTGTTGGTGTCTATGATGGGCATGGAGGGCCTGAGACGTCTCGGTTTATCAACAAACACCTATTTCAACATCTCAAGAGGTTTACTACTGAGCAACAATCAATGTCGGTGGATGTAATTCGCAAGGCATTCCAAGCAACAGAAGAGGGGTTTATGTCACTAGTTACGCAACTGTGGCCTATTTCACCGCAAATTGCTGCAGTTGGATCATGTTGTCTTGTTGGTGTTATTTGTAACGGAACCCTTTATATAGCAAATCTCGGCGATTCCAGGGCTGTTTTGGGAAGAACGGTTAAAGCAACTGGTGAAGTTTTAGCCACACAATTATCAACAGAGCACAATGCATCCATAGAGTCTATAAGACAGGAGCTTCATGCTTTGCACCCCGATGATTCGAATATTGTTGTCTTGAAGCATAACGTATGGCGTGTGAAGGGAATTATTCAAATTTCTAGATGTATTGGTGATGTATATTTGAAGAAAGCCGAGTTCAATAGAGAACCATTATATCCTAAGTTCCGACTTCACGAACCGTTCAAGAGGCCAATACTGAGCTCAGAACCATCAATATTAGTGCATCAGCTGCAGCCTCAAGATCAATTTATAATATTCGCATCTGATGGGCTCTGGGAACATTTCAGCAACCAAGAAGCAGTTGATATAGTTCAAAACAATCCTCACGCTGGGATTGCAAGGAGGATGGTGAAAACAGCGCTTAAAGCAGCAGCAAAGAAGAGAGAAATGAGATATTCAGATTTAAACAAAATAGATCGAGGAGTTCGTCGACATTTCCATGATGATATCACTGTGATAGTTGTATTTCTTGACTCAAATATGATGAGTAGGGCAAGCACTGTGAAGTTCCCTAGTATTTCTGTTAAAGGTGGCGGTGTTAGCCTCCCTCACAACTCATTAGCACCTTGTACTACTACAACAGATAATGGTAGAAGGTAA 1122 0.4251 MLSELVNFLKACFRPGLDGHARTSSDSGVQANNLLEDQSQIESGSLSLNESGPYGTFVGVYDGHGGPETSRFINKHLFQHLKRFTTEQQSMSVDVIRKAFQATEEGFMSLVTQLWPISPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRTVKATGEVLATQLSTEHNASIESIRQELHALHPDDSNIVVLKHNVWRVKGIIQISRCIGDVYLKKAEFNREPLYPKFRLHEPFKRPILSSEPSILVHQLQPQDQFIIFASDGLWEHFSNQEAVDIVQNNPHAGIARRMVKTALKAAAKKREMRYSDLNKIDRGVRRHFHDDITVIVVFLDSNMMSRASTVKFPSISVKGGGVSLPHNSLAPCTTTTDNGRR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00180 373 ProSitePatterns PPM-type phosphatase domain signature. 57 65 IPR000222 GO:0043169
Vifa3g00180 373 CDD PP2Cc 24 331 IPR001932 -
Vifa3g00180 373 SUPERFAMILY PP2C-like 23 332 IPR036457 -
Vifa3g00180 373 ProSiteProfiles PPM-type phosphatase domain profile. 20 331 IPR001932 -
Vifa3g00180 373 SMART PP2C_4 16 329 IPR001932 -
Vifa3g00180 373 FunFam Phosphatase 2C family protein 20 341 - -
Vifa3g00180 373 Gene3D - 18 342 IPR036457 -
Vifa3g00180 373 PANTHER PROTEIN PHOSPHATASE 27 329 IPR015655 GO:0004722|GO:0006470
Vifa3g00180 373 Pfam Protein phosphatase 2C 54 300 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00180 Vifa-Chr3 13788789 13791650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00180 1 368 PP2C-type Phosphatase Gene Family AT4G38520 69.388 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00180 - K01102 jre:109006616 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00180 3 13788789 13791650 Vifa3g00180 3 13788789 13791650 ECH