Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00178 ATGGGTGTGGCTCAAGACGCTAACGATGTGGATGACGGTACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTCATTCTTGAGAAAGTTAAGGGACCCAAATATCAAGAGATTGTTAATATTCGTCTAGGAGATGGTACTACTAGGCGTGGACAAGTTCTTGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATTGACAATAAGTTTACCACCGTGCAGTTTACTGGAGAGGTGTTAAAAACTCCTGTATCAATGGACATGCTTGGGAGGATATTTAACGGTTCTGGAAAACCAATTGATAACGGTCCGCCAATTCTACCTGAGGCTTACTTGGATATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCCGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTCTATTTTCAGCTGCCGGTCTCCCCCATAATGAAATTGCTGCTCAGATTTGTCGTCAAGCTGGCTTAGTCAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGAAGGAGGAGAGGACGACAATTTTGCCATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACTCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAGCGTATTATCACCCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTCGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAGGTGCCAGGAAGACGTGGTTATCCTGGTTATATGTATACAGATCTTGCAACAATTTATGAACGTGCCGGTAGAATTGAGGGGCGTAAAGGATCTATTACCCAAATTCCAATTCTAACCATGCCTAATGATGATATTACACATCCAACTCCTGATCTTACTGGATATATTACCGAGGGGCAGATATACATTGATAGGCAGTTGCATAATAGACAGATATACCCACCAATCAATGTCCTTCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAAGATGTCCAGGCAATGAAAGCTGTTGTCGGAGAAGAAGCACTTTCATCTGAGGACTTGTTGTATCTGGAATTTCTGGACAAGTTTGAGAGGAAGTTTGTGGCCCAGGGAGCCTACGACACCCGCAATATATTCCAGTCTCTAGATCTCGCGTGGACTTTACTTCGGATTTTCCCTCGTGAACTTCTTCATCGTATTCCAGCAAAGACTCTCGACCAGTTTTACAGCAGAGATGCTGGTAATTGA 1470 0.4293 MGVAQDANDVDDGTLEIGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSMDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00178 489 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Vifa3g00178 489 NCBIfam V-type ATPase subunit B 20 487 IPR005723 GO:0033180|GO:0046961|GO:1902600
Vifa3g00178 489 ProSitePatterns ATP synthase alpha and beta subunits signature. 369 378 IPR020003 GO:0005524
Vifa3g00178 489 Gene3D - 29 488 - -
Vifa3g00178 489 Hamap V-type ATP synthase beta chain [atpB]. 18 487 IPR022879 -
Vifa3g00178 489 FunFam V-type proton ATPase subunit B, brain 29 489 - -
Vifa3g00178 489 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Vifa3g00178 489 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 7 486 IPR022879 -
Vifa3g00178 489 PIRSF V-ATPsynth_beta/V-ATPase_B 12 489 IPR022879 -
Vifa3g00178 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 384 IPR027417 -
Vifa3g00178 489 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 378 IPR000194 GO:0005524
Vifa3g00178 489 CDD ATP-synt_V_A-type_beta_C 388 482 - -
Vifa3g00178 489 CDD V_A-ATPase_B 92 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00178 Vifa-Chr3 13552847 13558145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00178 1 489 Primary Pumps ATPases(2) AT4G38510 96.524 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00178 K02147 - gmx:100814088 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00178 3 13552847 13558145 Vifa3g00178 3 13552847 13558145 ECH