Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00161 ATGCAATCCATTAAAAAATCCTTGAAATCTTTAGCTTCTTATAACAAAAAATCTTCCAGAAACTTGCCGGATTCCGACGACCGTGAACACATCCCTATCCTTCTTCCTCAACAGCGTCGGCGCAGTGAGGATTTTTCTATGGCCGGAGACGTCGTCGTTAAGATCGACGACGGTGGTGAGCCTGAGAACAAGATTTGGAGAGAGTCCAGCTATGATTTCTGGAATGATACGGGAGACAATGGTGAGGAGAGTTTTGATTTTAGGAATAAAGGTCAGCAGCAGCAACCGGAGGATCCTCCGTCGCAGCTGATTGGTAAGTTTCTTCATAAGCAGAAGGTTTCCGGCGAGATGTCGCTTGATATGGATTTGGAAATGGAGGAGTTACAGAATGAGGAGGATAGAGATAGAGACGGAAAGTTGACGCCCGTGGAAGAGTCTCCGACGGTGATACAACGCGAGCTCAAGGTTTCGTTTGAGGAGCCTGCTTCTGCTTTTAGTAATGCGGTGGAAACACCGGCATCAGCGCCAGCACCAGCACCGGCACCGGCTTTTAATAATGTTATTGAAGCGACGAATGATCCTGTTCGGAGGAGACATAGTAAGGATTCGCCGTCTATGGGTGATTCTTCTAGACCTCCGTTTCCGCCGCATCATGACCCGCGTCGTTCGCGTTCACCGGCGGATGGAGGTGATGGCGAGGTTTTGACGTGTACCTCTAATGCTTCTTTTGAGAGGAACCTTTCCATGCAGAGAAAATCTGCTTTGTTGAAAACCAAAACTAAGTCTAGATTAATGGACCCGCCCGATGAACAACCTGATAGAAGATCCGGTCGGGTTGCTAAATCGGGTCAACTTTTGTCTGGATTTCTTGGGAAGAAAGGTGATGATGAAGAGGATGATCCGTTTTTGGAAGAAGATTTTCCGGATGAGTATAAGAAAACACAATTTAGTTTTTGGATTCTTCTTGAATGGTTGAGCTTGATTTTGATCATTGGCGCATTAATAACAACTATGAGTGTTCCTTTATTGAGGGATAAGAATTTGTGGGAGCTTAAGTTGTGGAAATGGGAAGTTATGATTCTTATTCTAATTTGTGAGAGTTCAAAGAGAGACAAAAGCACGTACTTCGATAGGATTCAAGAGTCCCTATTTAATCAATTCGTGATTGAAACACTCTCGGGGCCACCTTTGGTGGAAATTCGAAGGGCCGAAGAGGAAGAGGAAAGACTTGCTGACGAGGTTCAGAAGCTGCAAAATGCCGGTGCAAACATACCGGCTGATCTTAGAGCTACTGCGTTTCCTTCAAACAGAAGTGGAAGGTTGAGGAGTGGACTGCTGCAGAAAAGTCCCCTCAAAAGTGGAAAGTTTTCTATGCCACTTTCTAAGAAGTCTGATGATGGTGGGATTGGGAATGTACTTACTACATTGGATGAACAGATACTTGATTCCACTCCCGACGATGAGCATGCCACTCAAATCAGAAGTGAAAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAATGTTGCTAGGCGCGGCTGCAGGTTTATATACCCCGAGGACTTGATTCGTTTTATGCGAGAAGATGAAACAGTAAAAACCTTAAATCTCTTTGAAGGAGCGTCTGATTCAGGAAAAATCAGCAAATCCGCTTTGAAGAACTGGGTGGTGAATGCGTTCAGGGAGAGGAGAGCCCTTGCTCTGACATTGAATGACACCAAAACGGCAGTGAACAAACTTCACCGAATGCTCAATTTTTTAGTTGCCATTGTCATAATTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTTCTTCTTTTTATGTGAAAATTGATACGGTTCAGATGGTTGTAGAAGAAATGAACATATTGACTACGAATTTCTACCGTAGTCCTGACATGGGAGATGCTATTGAATTCTGTATCCATGTAGCTACTCCGCTTGAAAAGATTTCGCTTATGAAACATAGAATACATAGTTACGTTGATAATAAGAAAGAACACTGGTATCCTTCGCCTTTTATAGTCTTGAAGGATCATGATCAACTGAACATGGTGAAAGTGGCGATCTGGCCAACTCATAGGATGAACTTCCAAGACATGGGAGAAAGATTTATTCGAAGATCTATCCTGATTGAAGAGTTGATGAAGATTTTCAGAGATCTCGACATTCAATACCGTCTCATGCCTCTCGACATCAACGTTAGAGCTATGCCTACTTCTTCTGATCGTGTTCCAGCTAGTTGGTCAACATTCACAAATTGA 2277 0.4339 MQSIKKSLKSLASYNKKSSRNLPDSDDREHIPILLPQQRRRSEDFSMAGDVVVKIDDGGEPENKIWRESSYDFWNDTGDNGEESFDFRNKGQQQQPEDPPSQLIGKFLHKQKVSGEMSLDMDLEMEELQNEEDRDRDGKLTPVEESPTVIQRELKVSFEEPASAFSNAVETPASAPAPAPAPAFNNVIEATNDPVRRRHSKDSPSMGDSSRPPFPPHHDPRRSRSPADGGDGEVLTCTSNASFERNLSMQRKSALLKTKTKSRLMDPPDEQPDRRSGRVAKSGQLLSGFLGKKGDDEEDDPFLEEDFPDEYKKTQFSFWILLEWLSLILIIGALITTMSVPLLRDKNLWELKLWKWEVMILILICESSKRDKSTYFDRIQESLFNQFVIETLSGPPLVEIRRAEEEEERLADEVQKLQNAGANIPADLRATAFPSNRSGRLRSGLLQKSPLKSGKFSMPLSKKSDDGGIGNVLTTLDEQILDSTPDDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLIRFMREDETVKTLNLFEGASDSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIVIIGYLALDIGNCHHQISSFYVKIDTVQMVVEEMNILTTNFYRSPDMGDAIEFCIHVATPLEKISLMKHRIHSYVDNKKEHWYPSPFIVLKDHDQLNMVKVAIWPTHRMNFQDMGERFIRRSILIEELMKIFRDLDIQYRLMPLDINVRAMPTSSDRVPASWSTFTN 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00161 758 MobiDBLite consensus disorder prediction 167 242 - -
Vifa3g00161 758 MobiDBLite consensus disorder prediction 262 277 - -
Vifa3g00161 758 MobiDBLite consensus disorder prediction 20 47 - -
Vifa3g00161 758 MobiDBLite consensus disorder prediction 55 69 - -
Vifa3g00161 758 MobiDBLite consensus disorder prediction 214 228 - -
Vifa3g00161 758 Coils Coil 400 423 - -
Vifa3g00161 758 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 368 594 IPR016688 -
Vifa3g00161 758 MobiDBLite consensus disorder prediction 1 103 - -
Vifa3g00161 758 MobiDBLite consensus disorder prediction 255 280 - -
Vifa3g00161 758 MobiDBLite consensus disorder prediction 1 19 - -
Vifa3g00161 758 MobiDBLite consensus disorder prediction 115 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00161 Vifa-Chr3 12309807 12313375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00161 65 753 Mechanosensitive Ion Channel Family AT3G14810 39.278 5.69e-168 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00161 K22048 - zju:107427399 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00161 3 12309807 12313375 Vifa3g00161 3 12309807 12313375 ECH