Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00158 ATGTTGATGGTGGCGAAGGAAGAGAACGAAAGCTGCGGCAGCGGAGTGCACCACCGCACGACGTCGTCGACGTCATCGGCTCCGTCGCAAAGCCGGCAACATCGCCAGAAAGTCGAAGTGTACGATGAGATTCTCCGCCGGCTTAATGATTCCGGTAACGAAGAAGCTTTGCAGCCTGGATTTAACGATCAGCTTTGGGCTCACTTCAACCGTCTTCCTACACGGTATGCCTTAGATGTGAATGTAGAAAGGGCAGAAGATGTTCTAATGCACAAGAGGTTACTACAATTAGCACATGATCCGGCTAATAGGCCTTCAATTGAAGTTCACTTAGTCCAGCTTCATCCCTCATCTGATGAAAACCCAGCTGACTCGCTCCAATCATATTCTCCTGGGGTAGATTCTGGTCAAAGCTCTCCTAAGTATTCAAGCAGGCAGGGTATACTTCCACCTCCTGCTTTTGGCTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGAAAATGATTCTGAAGACTCAGAAGAGGAACGATTCGTACATGCAAGTGTACAATATTCACGGCCCATGCATGAAATCACTATCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTAACTGCTTTGCTTGCTGAGGTTGGACTGAACATCCAAGAAGCACATGCTTTTTCCACAACTGATGGTTACTCGTTGGACGTGTTTGTTGTTGAAGGCTGGCCCTATGAGGAAACAGAGAAGCTAAAAGCAACTTTGGAAAAAGAAGTCTTGAAGATTGAGAGGCATGATAGGTCCAGACAGCAATCAATATCATCTTCTGATGAGTGTGATCAAGCAAGGATGAACAATGAGCTGGATCATTTGAATATTCCAAGTGATGGCACAGATGTTTGGGAAATAGATCCCAAACATTTGAAATATGGAACTCAAATTGCATCTGCATCATATGGTGAACTATTTAAAGGTACATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGACTGAACATGTAAGTACAGAAATGCAGAAAGAGTTTGCTCAAGAAGTCTACATCATGAGAAAGGTTCGACACAAGAATGTTGTGCAATTCATGGGAGCATGTACCAAGCCCCCAGGCTTATGCATAGTTACAGAGTTTATGTCTGGTGGAAGTGTATATGACTACTTACATAAGCATAAAGGGTGTTTTAAATTTCCTACCCTGCTCAAAGTTGCAATTGATGTTTCTAAAGGAATGAGCTACTTGCACCAACATAACATAATCCACAGAGACTTGAAATCGGCCAATCTTTTGATGGATGAAAATGGTGTTGTAAAGGTTGCCGATTTTGGAGTTGCTAGAGTGAAAGTTCAATCTGGGGTTATGACAGCAGAAACTGGGACTTATCGTTGGATGGCTCCTGAGGTTATTGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAATATTTGACCCCTCTACAGGCAGCCATAGGAGTTGTTCAGAAGAGTATACGGCCCACCATCCCCAAGAGTGCTCATCCAAAGTTTGTTCAGATTCTTGAGAGGTCTTGGCAGCAAGATCCAACATTAAGACCTGATTTCTCTGAAATCATTGAGCTCTTGCAGCAATTAGCCACGGAGGTTGGAGATGAAGGAGAGGAGCGGCGCCGGGGTAATTCGGGCGGATTTCTGTCTGTCCTCAGACGAGGTCATCACTAA 1755 0.4422 MLMVAKEENESCGSGVHHRTTSSTSSAPSQSRQHRQKVEVYDEILRRLNDSGNEEALQPGFNDQLWAHFNRLPTRYALDVNVERAEDVLMHKRLLQLAHDPANRPSIEVHLVQLHPSSDENPADSLQSYSPGVDSGQSSPKYSSRQGILPPPAFGSSPNLEALALEENDSEDSEEERFVHASVQYSRPMHEITISTDDKPKLLSQLTALLAEVGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKATLEKEVLKIERHDRSRQQSISSSDECDQARMNNELDHLNIPSDGTDVWEIDPKHLKYGTQIASASYGELFKGTYCSQEVAIKVLKTEHVSTEMQKEFAQEVYIMRKVRHKNVVQFMGACTKPPGLCIVTEFMSGGSVYDYLHKHKGCFKFPTLLKVAIDVSKGMSYLHQHNIIHRDLKSANLLMDENGVVKVADFGVARVKVQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKSIRPTIPKSAHPKFVQILERSWQQDPTLRPDFSEIIELLQQLATEVGDEGEERRRGNSGGFLSVLRRGHH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00158 584 MobiDBLite consensus disorder prediction 116 158 - -
Vifa3g00158 584 SUPERFAMILY ACT-like 189 253 IPR045865 -
Vifa3g00158 584 PRINTS Tyrosine kinase catalytic domain signature 415 433 IPR001245 GO:0004672|GO:0006468
Vifa3g00158 584 PRINTS Tyrosine kinase catalytic domain signature 461 471 IPR001245 GO:0004672|GO:0006468
Vifa3g00158 584 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Vifa3g00158 584 PRINTS Tyrosine kinase catalytic domain signature 480 502 IPR001245 GO:0004672|GO:0006468
Vifa3g00158 584 PRINTS Tyrosine kinase catalytic domain signature 378 391 IPR001245 GO:0004672|GO:0006468
Vifa3g00158 584 ProSiteProfiles ACT domain profile. 191 266 IPR002912 -
Vifa3g00158 584 Pfam Protein tyrosine and serine/threonine kinase 304 553 IPR001245 GO:0004672|GO:0006468
Vifa3g00158 584 Gene3D - 188 262 - -
Vifa3g00158 584 MobiDBLite consensus disorder prediction 1 36 - -
Vifa3g00158 584 MobiDBLite consensus disorder prediction 15 34 - -
Vifa3g00158 584 Gene3D Transferase(Phosphotransferase) domain 1 383 571 - -
Vifa3g00158 584 CDD ACT_TyrKc 189 256 - -
Vifa3g00158 584 MobiDBLite consensus disorder prediction 560 584 - -
Vifa3g00158 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Vifa3g00158 584 CDD STKc_MAP3K-like 310 553 - -
Vifa3g00158 584 MobiDBLite consensus disorder prediction 118 145 - -
Vifa3g00158 584 Gene3D Phosphorylase Kinase; domain 1 294 382 - -
Vifa3g00158 584 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00158 584 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 103 560 - -
Vifa3g00158 584 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00158 584 FunFam Serine/threonine-protein kinase isoform 1 294 382 - -
Vifa3g00158 584 SUPERFAMILY Protein kinase-like (PK-like) 287 553 IPR011009 -
Vifa3g00158 584 Coils Coil 241 261 - -
Vifa3g00158 584 FunFam serine/threonine-protein kinase HT1 383 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00158 Vifa-Chr3 12216882 12223620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00158 2 583 MAP Kinase Kinase Kinase AT4G35780 63.014 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa3g00158 PK_Tyr_Ser-Thr 1.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00158 - - gmx:100805180 941.028