Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00154 ATGGAAGAGGACGACGATACAGTCACATACACAGTCAAAGTGACCATTACCGTCACCATCACGGACCCCGACCCCGACCCCGACGAACTCGTTTCTGATCGAGAAACACAAGCTAAGGGTGGCGATGGAGGAAAAGAGCCGCTGGAAAAGGATGGAGAATCGGGTAAACTCGAAGCCGATGGAGGAAAAGAGCCAGTGGAAAGTGACGAAGATGGAGGAGAGGAACCAGTGGAGAAGGACGGAGAATCGAGTAAACCCGACGAACCGGTGGAGAAGGATGGAAATGCGAGGAAACCGGTTCACGTGGCGCCTGTAGTACCTTCTTCTTCTACTCCACTGAAGAACAGACGTGGTAGAAAAAGAAAGTCAGATAATGATGTTTCAAGGAATACTCGAAACAAGAAACTTACATGCAATGAACGAGACTCCTTAATGTGCCATCAATGCCAGAGAAATGACAAGGGAAGAGTTGTCAGATGCACTAAATGCAAACGGAGAAGATTTTGCATACCTTGTTTAACTAACTGGTATCCAAAATTGAAACAAAGTGATGTTGCTGAAGCGTGTCCTGTGTGCTGCGATAATTGCAATTGCAAAGCCTGCTTGCGATCTTTTAAACTTATCAATGAAATGAAGCAAAGGGTTGAAACCAACAAGGATGAGGAGGTTGAGTTCTCTAAGTATATGCTTAAAGGGCTTCTTCCGTATTTAAGACAGTTGGATGAAGAACAGATGGTTGAGAAGGAAAGGGAAGCGAAGAGACAAGGGCTCTCATTCTCAAAGCTAGAAGTAAAAGAGGGAGATTATTTTAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGACTACCATAGAAGCTGTACAAAATGCCCTTTTGACATTTGTCTCCTCTGTTGCCGCGAGCTTCGTGAAGGGAAGCTTCTCGGTGGTGCAGACCCAATTGAGTTCGATTTTATCTTCAGAGGGCTTAATTATCTGCATGGTGGAAATGAAGACAGAATTGTCAGAGAAAAAAAGCCTTGTGATGCTGCTGAGCCTGAGAAACGTGAGTGGTCAAGATCTAGGTGGCATGCGAATGGTGATGGTAGCATTCCCTGTCCAAAAGCCGATAGTGAATATGATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAACTGCATCTCCGAGATAGTATGTAAAGCCGAAAAACTTGCAGAAAAAACTGAGCTTCACGTCGCAAAGGAGGCTCTAGATAATAGGTGTTCGTGTTGGAAGTCTGTTAGGAGCGTAGATGGTAGCTACAGTAACCTAAGGAAATCAGCTTTTCGTAAAGATTCCAGCGACAACTTTTTGTACTGTCCTAGGGCTGTAGGTCTACATCAGGAAGATTTAAGGCATTTTCAATGGCACTGGAGCAAAGGGGAGCCAGTAATTGTTAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCACTAGTCATGTGGCGTGCATTTCGTCAAATTACCAGTTCCAATTTTGATGTAATTTTGGATGTGAAGACTGTTAATTGCTTAGATTGGTGTGAGGAAGATATTAATATCCACAAGTTCTTTACTGGGTACACGAATGGTCGCAATGATTGGCTTAATTGGCCTGAGATGTTGAAATTGAAAGATTGGCCTCCTTTTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCCGAGTTCATATCTTCCTTGCCTTTTAAAGAATATACAGATCCTTTTAGGGGGGCTCTCAACCTTTATGTGAAATTGCCGGATCACTGTGTAAAGCCAGACATGGGGCCAAGAACATACGTTGCTTATGGATTTGCTCAGGAGCTTGGACGTGGTGATTCCGTGACTAAGCTCCACTGTGATGTGTCTGATGCTGTAAATGTGTTGACTCATATTGCTAAAGTGGAACTGAAACCTGAGGAAACTACAGCCATTGAGAAATTGACATGTAAGCACCTCGAGCAAGATATGAGGGAGCTGTATGGTGACGAGAAAGTAACAGTGAAACAACAAAACATTTTGTTGGTTGGAGAGGATTCTTTAGATGATGGCGCACTCTGGGATATTTTTCGGCGAGAGGATGTACCAAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGACATGTCCACTGCGATCCTTTAAAGCAGGTTATTCACCCTATTCATGATCAAACCATTTATCTGACTAAGGAACATAAGAGGAAACTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTTATTCCTGCTGGTTTACCTCACCAAGTTAGAAATCTGAAGTCATGCTTCAAGGTTGCACATGATTTTGTCTCTCCTGAACATGTTGGTGAGTGCATCCGTTTGACAGAGGAATTTCGCAAGCTTCCGATAAATCACAGAGCCTCCGAGGACAAGTTCGAGGTGAAGAAAATTATCATCCATGCTATGCGAGATGTGGTTGAAAAATTAGAGAAAGCAAGGTTAGTGATTGCGAATTTCAAACTCTTTGTTTATGGAATTGTATACTTACATCTCTTGATTATCCTGTCAAAGGCATGTTGA 2601 0.4268 MEEDDDTVTYTVKVTITVTITDPDPDPDELVSDRETQAKGGDGGKEPLEKDGESGKLEADGGKEPVESDEDGGEEPVEKDGESSKPDEPVEKDGNARKPVHVAPVVPSSSTPLKNRRGRKRKSDNDVSRNTRNKKLTCNERDSLMCHQCQRNDKGRVVRCTKCKRRRFCIPCLTNWYPKLKQSDVAEACPVCCDNCNCKACLRSFKLINEMKQRVETNKDEEVEFSKYMLKGLLPYLRQLDEEQMVEKEREAKRQGLSFSKLEVKEGDYFKDERVYCDNCKTSIFDYHRSCTKCPFDICLLCCRELREGKLLGGADPIEFDFIFRGLNYLHGGNEDRIVREKKPCDAAEPEKREWSRSRWHANGDGSIPCPKADSEYDHGFLELRRILPPNCISEIVCKAEKLAEKTELHVAKEALDNRCSCWKSVRSVDGSYSNLRKSAFRKDSSDNFLYCPRAVGLHQEDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQITSSNFDVILDVKTVNCLDWCEEDINIHKFFTGYTNGRNDWLNWPEMLKLKDWPPFDLFQELLPRHHAEFISSLPFKEYTDPFRGALNLYVKLPDHCVKPDMGPRTYVAYGFAQELGRGDSVTKLHCDVSDAVNVLTHIAKVELKPEETTAIEKLTCKHLEQDMRELYGDEKVTVKQQNILLVGEDSLDDGALWDIFRREDVPKLEEYLKKHFREFRHVHCDPLKQVIHPIHDQTIYLTKEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGLPHQVRNLKSCFKVAHDFVSPEHVGECIRLTEEFRKLPINHRASEDKFEVKKIIIHAMRDVVEKLEKARLVIANFKLFVYGIVYLHLLIILSKAC 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00154 866 SMART cupin_9 564 806 IPR003347 -
Vifa3g00154 866 MobiDBLite consensus disorder prediction 17 134 - -
Vifa3g00154 866 ProSiteProfiles JmjC domain profile. 583 806 IPR003347 -
Vifa3g00154 866 MobiDBLite consensus disorder prediction 30 63 - -
Vifa3g00154 866 SUPERFAMILY Clavaminate synthase-like 460 837 - -
Vifa3g00154 866 Gene3D Cupin 452 815 - -
Vifa3g00154 866 Pfam JmjC domain, hydroxylase 693 789 IPR003347 -
Vifa3g00154 866 MobiDBLite consensus disorder prediction 119 134 - -
Vifa3g00154 866 ProSiteProfiles Zinc finger RING-type profile. 146 192 IPR001841 -
Vifa3g00154 866 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 37 839 IPR045109 GO:0032454|GO:0033169
Vifa3g00154 866 MobiDBLite consensus disorder prediction 78 98 - -
Vifa3g00154 866 FunFam Transcription factor jumonji domain-containing protein 447 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00154 Vifa-Chr3 11693240 11698980 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa3g00154 JmjC 5.5e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00154 K15601 - csav:115721711 869.381