Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00152 ATGGAAGAGGACGACGATACAGTCACATACACAGTCAAAGTGACCATTACCGTCACCATCACGGACCCCGACCCCGACCCCGACCCCGACGAACTCGTTTCTGATCGAGAAACACAAGCTAAGGGTGGCGATGGAGGAAAAGAGCCGCTGGAAAAGGATGGAGAATCGGGTAAACTCGAAGCCGATGGAGGAAAAGAGCCAGTGGAAAGTGACGAAGATGGAGGAGAGGAACCAGTGGAGAAGGACGGAGAATCGAGTAAACCCGACGAACCGGTGGAGAAGGATAGAAATGCGAGGAAACCGGTTCACGTGGCGCCTGTAGTACCTTCTTCTTCTATTCCACTGAAGAACAGACGTGGTAGAAAAAGAAAGTCAGATAATGATGTTTCAAGGAATACTCGAAACAAGAAACTTACATGCAATGAACGAGACTCCTTGATGTGCCATCAATGCCAGAGAAATGACAAGGGAAGAGTTGTCAGATGCACTAAATGCAAACGGAGAAGATTTTGCATACCTTGTTTAACTAACTGGTATCCAAAATTGAAACAAAGTGATGTTGCTGAAGCGTGTCCCGTGTGCTGCGATAATTGCAATTGCAAAGCCTGCTTGCGATCTTTTAAACTTATCAATGAAATGAAGCAAAGGGTTGAAACCAACAAGGATGAGGAGGTTGAGTTCTCTAAGTATATGCTTAAAGGGCTTCTTCCGTATTTAAGACAGTTGGATGAAGAACAGATGGTTGAGAAGGAAAGGGAAGCGAAGAGACAAGGGCTCTCATTCTCAAAGCTAGAAGTAAAAGAGGGAGATTATTTTAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGACTACCATAGAAGCTGTACAAAATGCCCTTTTGACATTTGTCTCCTCTGTTGCCGCGAGCTTCGTGAAGGGAAGCTTCTCGGTGGTGCAGACCCAATTGAGTTCGATTTTATCTTCAGAGGGCTTAATTATCTGCATGGTGGAAATGAAGACAGAATTGTCAGAGAAAAAAAGCCTTGTGATGCTGCTGAGCCTGAGAAACGTGAGTGGTCAAGATCTAGGTGGCATGCGAATGGTGATGGTAGCATTCCCTGTCCAAAAGCCGATAGTGAATGTGATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAACTGCATTTCCGAGATAGTATGTAAAGCCGAAAAACTTGCAGAAAAAACTGAGCTTCACGTCGCAAAGGAGGCTCTAGATAATAGGTGTTCGTGTTGGAAGTCTGTTAGGAGCGTAGATGGTAGCTACAGTAACCTAAGGAAATCAGCTTTTCGTAAAGATTCCAGCGACAACTTTTTGTACTGTCCTAGGGCTGTAGGTCTACATCAGGAAGATTTAAGGCATTTTCAATGGCACTGGAGCAAAGGGGAGCCAGTAATTGTTAGCAATGTACTTGAATGTACATCTGGTCTAAGCTGGGAACCACTAGTCATGTGGCGTGCATTTCGTCAAATTACCAGTTCCAATTTTGATGTAATTTTGGATGTGAAGACTGTTAATTGCTTAGATTGGTGTGAGGAAGATATTAATATCCACAAGTTCTTTACTGGGTACACGAATGGTCGCAATGATTGGCTTAATTGGCCTGAGATGTTGAAATTGAAAGATTGGCCTCCTTTTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCCGAGTTCATATCTTCCTTGCCTTTTAAAGAATATACAGATCCTTTTAGGGGGGCTCTCAACCTTTATGTGAAATTGCCGGATCACTGTGTAAAGCCAGACATGGGGCCAAGAACATACGTTGCTTATGGATTTGCTCAGGAGCTTGGACGTGGTGATTCCGTGACTAAGCTCCACTGTGATGTGTCTGATGCTGTAAATGTGTTGACTCATATTGCTAAAGTGGAACTGAAACCTGAGGAAACTACAGCCATTGAGAAATTGACATGTAAGCACCTCGAGCAAGATATGAGGGAGCTGTATGGTGACGAGAAAGTAACAGTGAAACAACAAAACATTTTGTTGGTTGGAGAGGATTCTTTAGATGATGGCGCGCTCTGGGATATTTTTCGGCGAGAGGATGTACCAAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGACATGTCCACTGCGATCCTTTAAAGCAGGTTATTCACCCTATTCATGATCAAACCATTTATCTGACTAAGGAACATAAGAGGAAACTTAAGGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTTATTCCTGCTGGTTTACCTCACCAAGTTAGAAATCTGAAGTCATGCTTCAAGGTTGCACATGATTTTGTCTCTCCTGAACATGTTGGTGAGTGCATCCGTTTGACAGAGGAATTTCGCAAGCTTCCGATAAATCACAGAGCCTCCGAGGACAAGTTCGAGGTGAAGAAAATTATCATCCATGCTATGCAAGATGTGGTTGAAAAATTAGAGAAAGCAAGGTCTAGGTAA 2535 0.4312 MEEDDDTVTYTVKVTITVTITDPDPDPDPDELVSDRETQAKGGDGGKEPLEKDGESGKLEADGGKEPVESDEDGGEEPVEKDGESSKPDEPVEKDRNARKPVHVAPVVPSSSIPLKNRRGRKRKSDNDVSRNTRNKKLTCNERDSLMCHQCQRNDKGRVVRCTKCKRRRFCIPCLTNWYPKLKQSDVAEACPVCCDNCNCKACLRSFKLINEMKQRVETNKDEEVEFSKYMLKGLLPYLRQLDEEQMVEKEREAKRQGLSFSKLEVKEGDYFKDERVYCDNCKTSIFDYHRSCTKCPFDICLLCCRELREGKLLGGADPIEFDFIFRGLNYLHGGNEDRIVREKKPCDAAEPEKREWSRSRWHANGDGSIPCPKADSECDHGFLELRRILPPNCISEIVCKAEKLAEKTELHVAKEALDNRCSCWKSVRSVDGSYSNLRKSAFRKDSSDNFLYCPRAVGLHQEDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQITSSNFDVILDVKTVNCLDWCEEDINIHKFFTGYTNGRNDWLNWPEMLKLKDWPPFDLFQELLPRHHAEFISSLPFKEYTDPFRGALNLYVKLPDHCVKPDMGPRTYVAYGFAQELGRGDSVTKLHCDVSDAVNVLTHIAKVELKPEETTAIEKLTCKHLEQDMRELYGDEKVTVKQQNILLVGEDSLDDGALWDIFRREDVPKLEEYLKKHFREFRHVHCDPLKQVIHPIHDQTIYLTKEHKRKLKEEYGIEPWTFVQKLGDAVFIPAGLPHQVRNLKSCFKVAHDFVSPEHVGECIRLTEEFRKLPINHRASEDKFEVKKIIIHAMQDVVEKLEKARSR 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00152 844 Pfam JmjC domain, hydroxylase 695 791 IPR003347 -
Vifa3g00152 844 MobiDBLite consensus disorder prediction 32 65 - -
Vifa3g00152 844 ProSiteProfiles Zinc finger RING-type profile. 148 194 IPR001841 -
Vifa3g00152 844 SMART cupin_9 566 808 IPR003347 -
Vifa3g00152 844 MobiDBLite consensus disorder prediction 80 101 - -
Vifa3g00152 844 ProSiteProfiles JmjC domain profile. 585 808 IPR003347 -
Vifa3g00152 844 SUPERFAMILY Clavaminate synthase-like 462 841 - -
Vifa3g00152 844 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 37 842 IPR045109 GO:0032454|GO:0033169
Vifa3g00152 844 MobiDBLite consensus disorder prediction 121 136 - -
Vifa3g00152 844 FunFam Transcription factor jumonji domain-containing protein 449 817 - -
Vifa3g00152 844 Gene3D Cupin 454 817 - -
Vifa3g00152 844 MobiDBLite consensus disorder prediction 17 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00152 Vifa-Chr3 11660019 11665850 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa3g00152 JmjC 5.1e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00152 K15601 - csav:115721711 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00152 3 11660019 11665850 Vifa3g00152 3 11660019 11665850 ECH