Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00151 ATGGCGGAGGAACACAACAATACCACAACCACAGTCACAGAAGATTCCATTCCCGATCATCGAGAAAAAACTGATACACCCGAAACGGTGCCGTTCAGAGTCGATGACGTGGCAAAGGACGCGAATGTTGTATCGGGAACGGCGTCCTTGAAGGAAGCAGAAGAAGCTATGAATATTGGCAACAAAACGGCGTCGTTGAGGGACGGTTTAGGTTCGGTTGAAGGTTATGACGTGGCAGCTGGATATTCTTCTTCTTCTTCTGTTAAACCTACCGTCGTTGAGCCGATAAAGTACCAAAGAAGGAAAAATAAACCAAAGAGTAATTTCCAAATTGAAACGGTAAAGAATGTACCAAAAGAAGAAGAAACGGTTAAAGTCGATGACGTGGCAGGTGGTGGCTCTGATTCTCTTCCACCGGAGAATGTGAAACGCGGCGTAAAGAGAAAACCGGAGAAGGAAGATGAAGCGGTCGAAGGCAATGGCGTGGCGGTGGCGTTGGGAGGTTTATCTTCTGTTGATTTTATTGCGAGAAAGAGTGAACGTCCTAGGAAGGTTAAATTGTTTGCGGATTTCGTGTCAGTGTTGGACGTGGAAGTGAAGAAGAACGGGGATTGTAGAAGGAAGAATGCGGTAATAGATGTACATGAATGGGAATATGTGAAGGAAGAGAAGAAGAAACCTGGTAGAAAAAGGAAGAATGATTATAGTTCTGAAGAAGATTATAAAGATGCATTAGATGGGGAAAGCGTGAAGAAAGAGAAGAAGAATGGTTCTAGTTCTGAAGACGATTATAATCTTGAACTAGACGGGGAAAATGTAAAGAATAGGAAGAAGAAACCTGGTAGAAAAAGTAAGGCAGTTCATGATGATTCTGGAGAAGCATATGAAGCTGCACTTGACGGGGAAAATGGGAAGAAAACACCTGGTCGGAAAATTAAGATCGAAGAGAATGAACTGGTCTCTGAAAACAAGTCTGAGAGTTATGTGCTGAAGGACATTAAAACTGAAACGCCTTTGTCTAATGATAATAAAGGTTATCCTTTACGAACGACTATTAACAAGAAACCTGCATTACTTGAACATGTGGTGCCAAAACCCAACAATAGAAATACTAAGTTTGTTGAAGAGGTGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACTAACTGCAAACGGAAAAGATTTTGCATACCCTGTATAAAAAATTGGTATCCTTACTGGAAAGAGGACGAAATTGCTGAGAAATGTCCGGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGCGATCATGTGTACTTGTCAATGCAATTAAAGACAAAAAGAAAGAAACCAGCAAAGATCATGAGGTTGGGCCCTCCAAGTATATGCTAAAAGAACTTCTTCCGCATTTAATACGATTGGATGAGGAACAAATGACCGAGAAGGAGATAGAGGCGAAAAGACAAGGGCTCCCACTATCGGAGCTAACAATAAAAGTAGCAGATTACTTTAAAGATGAGCGCGTGTACTGTGATAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGTACAAAATGCTCATTTGACATCTGTCTCCTCTGTTGCTGTGAGCTTCGTGGTGGCAAGCTTCTTGGTGGTGATGAACCGATTGAGTTTGAGTTTATCTTCCGAGGGCGTGATTATCTGCATGGTGGAGATGCAGAGAGACAAAAAAGAATAAAGAAACCTCGTTCTGCAGCCCAGCCTGAGATTCGTGAATGGTCAAAATCTGGGTGGCATGCAGATACTGATGGTAGCATTCCCTGTCCAAAGACCAACAATGATTGTGACCATGGTTTCCTTGAACTGAGAAGCATACTTCAGCCAAATTGCATATCTGAGTTAGTATGGAAAGCAAAAGAACTTGTAGAGGAAGCAATGAAACTTCAAGATGCCGAGGAGAATCTAGATGATAGGTGTTCTTGTTTGAAGCCTGTTAAGAATTCAGATGATATACACAATAACACAAGGAAGACAGCTTTTCGTGAAGATTCCAGTGACAACTTTTTATATTGTCCTAGGGCTGTAGATCTACATCAGGAGGATTTAAGACATTTTCAATTGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCGTTTGTCATGTGGCGTGCATTCCGTCAGATAAGCAACACGAAGCACAAAACACTCTTGGATGTGAAGGCAATTGATTGTTTAGATTGGTGTGAGGGAGAGATTAATGTGCACCAATTCTTTACTGGGTACACAGAGGGTCGATTGGATTGGTGTAAATGGCCTCAGGTTTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATGTTCTTTGCCGTTTAAAGAATATACAGATCCTTTCAAAGGTTCTCTTAACCTTGCCGTGAAGTTGCCTGGCGATGTTTTAAAGCCAGACATGGGCCCAAAAACATACATTGCTTACGGATTTGCTCAAGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAAGTTGAATTGAAACCTGAGAGCATTGATGCCATCAAGAAACTGACAAGAAAGCACCTCGAGCAAGACAAACGGGAGCTACATCTACGTGCTGATAAACACGATGGACAAACCAATGTTAGCATGCTTGATGATTCATCGTCTTCCATAACAGCATCAGACGAGCAAAGTATAGCCCGAGTCATGGATAATGAAAATGAGTTATGCAATGAGAAGGTGGCTGAATATGTTCATCAACACTCAGGTGCATATAATGATGGCCTTTCTTCTGGATCAAAGCTCAAAGAGGTTGATGAAGTGATTGTGAAAAAAGATGATAGTTTGTTGGTTGGGGATGATTCTTTAGATGGTGCCCTTTGGGATATTTTTCGGAGAGAGGATGTACCAAAATTGGAGGAATATCTAAAGAGGCATTTTAGAGAGTTCAGGCATGCCCATTGCTCTCCTTTAAAGCAGGTTGTTCACCCCATCCATGATCAGACCTTTTATTTGACTATTGAGCATAAGAAGAGACTGAAGAAAGAGTATGGAATTGAGCCCTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTCATTCCCGCTGGTTGTCCCCACCAAGTCCGTAATCTAAAGTCATGCACCAAGGTTGCTCTTGATTTTGTCTCTCCTGAAAATGTTGGCGAGTGCTTTCGCTTGACAGAGGAATTCCGCAAGCTTCCAGTAAATCACAAGTCTACAGAGGACAAATTGGAGGTGAAGAAAATGATTATATATGCTATGCTTGACCTGGTAAAAAACTTGGAAGAAGCAAGGTCTGGGGAAACTGGGGAAACTAAGGTTCCAGTGTAA 3465 0.419 MAEEHNNTTTTVTEDSIPDHREKTDTPETVPFRVDDVAKDANVVSGTASLKEAEEAMNIGNKTASLRDGLGSVEGYDVAAGYSSSSSVKPTVVEPIKYQRRKNKPKSNFQIETVKNVPKEEETVKVDDVAGGGSDSLPPENVKRGVKRKPEKEDEAVEGNGVAVALGGLSSVDFIARKSERPRKVKLFADFVSVLDVEVKKNGDCRRKNAVIDVHEWEYVKEEKKKPGRKRKNDYSSEEDYKDALDGESVKKEKKNGSSSEDDYNLELDGENVKNRKKKPGRKSKAVHDDSGEAYEAALDGENGKKTPGRKIKIEENELVSENKSESYVLKDIKTETPLSNDNKGYPLRTTINKKPALLEHVVPKPNNRNTKFVEEVSLMCHQCQRNDKGRVVRCTNCKRKRFCIPCIKNWYPYWKEDEIAEKCPVCCGNCNCKACLRSCVLVNAIKDKKKETSKDHEVGPSKYMLKELLPHLIRLDEEQMTEKEIEAKRQGLPLSELTIKVADYFKDERVYCDNCKTSIFDYHRSCTKCSFDICLLCCCELRGGKLLGGDEPIEFEFIFRGRDYLHGGDAERQKRIKKPRSAAQPEIREWSKSGWHADTDGSIPCPKTNNDCDHGFLELRSILQPNCISELVWKAKELVEEAMKLQDAEENLDDRCSCLKPVKNSDDIHNNTRKTAFREDSSDNFLYCPRAVDLHQEDLRHFQLHWSKGEPVIVSNVLECTSGLSWEPFVMWRAFRQISNTKHKTLLDVKAIDCLDWCEGEINVHQFFTGYTEGRLDWCKWPQVLKLKDWPPSNLFEESLPRHCAEFICSLPFKEYTDPFKGSLNLAVKLPGDVLKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELKPESIDAIKKLTRKHLEQDKRELHLRADKHDGQTNVSMLDDSSSSITASDEQSIARVMDNENELCNEKVAEYVHQHSGAYNDGLSSGSKLKEVDEVIVKKDDSLLVGDDSLDGALWDIFRREDVPKLEEYLKRHFREFRHAHCSPLKQVVHPIHDQTFYLTIEHKKRLKKEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHKSTEDKLEVKKMIIYAMLDLVKNLEEARSGETGETKVPV 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00151 1154 Coils Coil 636 656 - -
Vifa3g00151 1154 Pfam JmjC domain, hydroxylase 992 1092 IPR003347 -
Vifa3g00151 1154 ProSiteProfiles JmjC domain profile. 820 1109 IPR003347 -
Vifa3g00151 1154 Gene3D Cupin 687 1118 - -
Vifa3g00151 1154 MobiDBLite consensus disorder prediction 284 312 - -
Vifa3g00151 1154 SMART cupin_9 801 1109 IPR003347 -
Vifa3g00151 1154 MobiDBLite consensus disorder prediction 220 312 - -
Vifa3g00151 1154 MobiDBLite consensus disorder prediction 1 31 - -
Vifa3g00151 1154 MobiDBLite consensus disorder prediction 141 158 - -
Vifa3g00151 1154 MobiDBLite consensus disorder prediction 15 31 - -
Vifa3g00151 1154 ProSiteProfiles Zinc finger RING-type profile. 381 427 IPR001841 -
Vifa3g00151 1154 MobiDBLite consensus disorder prediction 122 160 - -
Vifa3g00151 1154 MobiDBLite consensus disorder prediction 220 276 - -
Vifa3g00151 1154 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 131 1143 IPR045109 GO:0032454|GO:0033169
Vifa3g00151 1154 SUPERFAMILY Clavaminate synthase-like 699 1129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00151 Vifa-Chr3 11600399 11614435 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa3g00151 JmjC 8.3e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00151 K15601 - gmx:100780803 1152.12