Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00147 ATGGAGAACGACACCACCGTCACCACCACCGTCAACGGCATCGGAAACACGGCCAAACTAGGTTCAGGCGGCGGCGGAGGAGGAGTAAAATCCAACAATCATGTACATGAAGAAGAACATTCGAATTTGAACGGCGAGGAAAACGTACCAGAGAAAAGGGAAGAGAAAGAAGAAGAAGATGAAGACAAAGGGGAACAGCAACAACAACAACAACCACTTACTGGATCTGAAACCGCCGCTCAACAACCTTCTAGAACACCTTTCACTAATCTCAGCCAAGTCGATGCTGACCTCGCCCTCGCCAGAACGCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAGGGTTATTTGCATGATGATGGAGATGATTTTGATGATCTGCACGATGGTACTGATGTAGATGAGGATGATGAGGACGAGGATGAGGATGAGGATGATGATAATGACGATGAATATGAAGATGAAGATGTATTTGATGTCCATGCTCATGCTAGTGCTGGAGAACATGGTAATCCCACAATTGAATTTGACCCGGAGCTGTTTTCAAGTGACGAGGCTTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAGATGGCAGCTAGACTGTTGGCACTTGCTGGGATACATGATCAGGACGCTGAGGACATGGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTCCTGGCATTAGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGGCTGATACTATTGCCGGTTTGCCATCAGTCAACTATAAGATGGGGAGTGATCAACATGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAACTGGTTGAAAATAAACAAGGTATGTTCATGCATGACGTGCTTCTCCTACCCTCCCAATCATTTCCCTCCCAATCATTTCCGTTTAGCTGCATGCATGTGGTCTTTGTGCAAGTTCCTGGTGTAA 1092 0.4652 MENDTTVTTTVNGIGNTAKLGSGGGGGGVKSNNHVHEEEHSNLNGEENVPEKREEKEEEDEDKGEQQQQQQPLTGSETAAQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGYLHDDGDDFDDLHDGTDVDEDDEDEDEDEDDDNDDEYEDEDVFDVHAHASAGEHGNPTIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDQDAEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSADTIAGLPSVNYKMGSDQHGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCSCMTCFSYPPNHFPPNHFRLAACMWSLCKFLV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00147 363 MobiDBLite consensus disorder prediction 32 66 - -
Vifa3g00147 363 MobiDBLite consensus disorder prediction 127 165 - -
Vifa3g00147 363 FunFam E3 ubiquitin ligase BIG BROTHER-related 260 339 - -
Vifa3g00147 363 MobiDBLite consensus disorder prediction 67 93 - -
Vifa3g00147 363 Pfam Ring finger domain 292 336 IPR001841 -
Vifa3g00147 363 MobiDBLite consensus disorder prediction 1 17 - -
Vifa3g00147 363 MobiDBLite consensus disorder prediction 1 93 - -
Vifa3g00147 363 MobiDBLite consensus disorder prediction 138 165 - -
Vifa3g00147 363 SUPERFAMILY RING/U-box 285 346 - -
Vifa3g00147 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 339 IPR013083 -
Vifa3g00147 363 ProSiteProfiles Zinc finger RING-type profile. 294 336 IPR001841 -
Vifa3g00147 363 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 41 333 IPR043312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00147 Vifa-Chr3 11327500 11331379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00147 84 238 C3H Transcription Factor Family AT3G19910 52.500 4.99e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00147 K19045 - gmx:100787418 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00147 3 11327500 11331379 Vifa3g00147 3 11327500 11331379 ECH