Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00141 ATGTCTTCTGGCGGCGGCGACGGCGGTGGCGGAAAGCTATACTTCTGCCACAATTGCACTCAAAGAGTTACCTGTTCGGAGGATTCCGAGCCTTTCTGTCCAATCTGCTTCCAAGGTTTCATTGAAGAATGCACTCCCGATCCAAACCCTAACCCTAACGTCATTTTCCGCTTCAACCAAGACGATTCCGATAACGAATCCGATTTTCCCTTCCATCCTTTCTCTCTTCTCCCTTTGTTGCTTTCTTCTGCTTCGATTTCACGTACTCGCCTCGAAACCACCGAAGCCGCTGAAACGGAAAACGATAATTTCGACCCTTTCACTTTCCTTCAGAATCATCTTAACGGCCTTCATGCTGATGGTGCTAATATCCAGTTCGAGATCAATCATGGTTCGGGTTCCGAATCGGGGTTTCGCGTTCCGGCTAACATGGGGGATTACTTCCTCGGTCCTGGTCTTGAGCAATTGATTCAGCAGCTTGCTGAGAATGATCCTAACCGGTATGGAACTCCTCCGGCGTCAACGGATGCTGTTCAGAATCTTCCCAGTGTTGTTGTTGATGATGAGTTGTTGAACTCGGAGATGAACCAGTGTGCTGTTTGTCAGGATGAGTTTGACAAGGGTTTGCAGGTGAAGCAAATGCCTTGTAAGCATTGTTATCATGATGATTGCTTGCTTCCGTGGCTTCAGTTGCATAACTCGTGCCCTGTTTGTCGATATGAATTGCCTACTGATGATGCTGATTATGAGAACCGGGATAGGAGCAGTGATGGTGATGGGTTGAGGTCTGTTGTTGATGGGACCAGTGCTGGTGGTGGTGCAGGAGGAGGGAATAGACCTGTTCACAGGACTTTTAGAATATCTTTGCGGTATCCTTTTGGTTCTGGTAACTCTGCTCAGGACTCTGATGGAAGGGGATTGGGAAGTAGGCAAGAAGATTTGGATTGA 948 0.4789 MSSGGGDGGGGKLYFCHNCTQRVTCSEDSEPFCPICFQGFIEECTPDPNPNPNVIFRFNQDDSDNESDFPFHPFSLLPLLLSSASISRTRLETTEAAETENDNFDPFTFLQNHLNGLHADGANIQFEINHGSGSESGFRVPANMGDYFLGPGLEQLIQQLAENDPNRYGTPPASTDAVQNLPSVVVDDELLNSEMNQCAVCQDEFDKGLQVKQMPCKHCYHDDCLLPWLQLHNSCPVCRYELPTDDADYENRDRSSDGDGLRSVVDGTSAGGGAGGGNRPVHRTFRISLRYPFGSGNSAQDSDGRGLGSRQEDLD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00141 315 SMART ring_2 198 238 IPR001841 -
Vifa3g00141 315 FunFam E3 ubiquitin-protein ligase RING1-like 159 245 - -
Vifa3g00141 315 MobiDBLite consensus disorder prediction 246 315 - -
Vifa3g00141 315 MobiDBLite consensus disorder prediction 246 260 - -
Vifa3g00141 315 Pfam Ring finger domain 196 239 IPR001841 -
Vifa3g00141 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 243 - -
Vifa3g00141 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 245 IPR013083 -
Vifa3g00141 315 ProSiteProfiles Zinc finger RING-type profile. 198 239 IPR001841 -
Vifa3g00141 315 Pfam zinc-ribbon 13 43 IPR039525 GO:0061630
Vifa3g00141 315 SUPERFAMILY RING/U-box 177 245 - -
Vifa3g00141 315 MobiDBLite consensus disorder prediction 291 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00141 Vifa-Chr3 11164704 11165651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00141 142 254 C3H Transcription Factor Family AT5G01980 48.673 8.37e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00141 K11982 - gmx:100785289 376.326