Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00137 ATGTCTCGGACAACCAGTGTCCCACGTGCTTTTCAGTCCATTAAGTCGCTGCCACCTGAGTACAAGTATGATAATAATCGAAACGCTGGTCAAGTGGAGAAGCATGGAAATGTTAAACTGAGAAGCAATGATCTGATTCGATCAAATGGTCGTGAAAATGGTGTAATATCAGGGGAGGTTTCTAAGGAAGCCAATAACAGTGCTGGCGACATGGATCTCTTTGACGAAGAATCTCCTTATGGTGGAAACGCTGAATCATTTGAAGACAGGCCGCCGTATGCCAATGAAGACTCAATATCTGCTTTGTTGCCCCAACCGTCAATTTCAACATCCTCTAGGGAAAGCAGGTGGAGTGATACAACTCCTTATGCTTCAAAGAAGAAGCTTCAGTCTTGGTTTCAACTTTCTAATGGGGATTGGGAACTGGTAAAGATAATATCAGCTTCTGGAGCAGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTCAAAAGTGAAAGATGAAAGTTTGGTACCGGCAAATCCTGATATTCTTGATGGAGTGGATGACCTGATGCAACTTAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCAACATAGATACAATCAAAATATGATCTATACAAAAGCAGGGCCTGTTTTGGTGGCCGTAAATCCCTTTAAGAAAGTTCCTCTGTACGGTATTGACTATATTGAAGCCTACAAGCGTAAAGCAAATGAAAGCCCTCATGTGTATGCAATTACAGACTCAGCCATAAGAGAGATGACACGGGATGAAGTTAACCAATCAATAATTATAAGTGGAGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAATACCTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGCATGAAATATTAAAGACTAATCCAATACTGGAAGCCTTTGGAAACGGAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAACTCATTGAGATTCACTTCAGTGAAACAGGAAAAATATCTGGTGCTAATATTCAAACATTTTTGTTGGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCACCATCTCTCAGGGAGAAGCTAAATCTACAAAGTGTGGAAGACTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTACTGGCGTTGATGATGCAGAAGAATTTCGTATAGTCATGGATGCTCTAGATGTTGTCCACATTAGCAAAGGAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTGTTATGGTTGGGAAACATATCATTTACTGTGATCGATAATGAAAATCATATTCAAGCCGTTGAGGATGAGGGGCTGTTCAGCACTGCCAAGTTGATTGGATGTGAAATTGAAGATCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGTAATGATATTATTGTCCAGAAGTTGACGCTATCTCAGGCTAGTGATGCAAGAGATGCTTTGGCGAAGTCTATTTATGCATGTCTGTTTGATTGGCTGATCGAACAAATAAACAAATCACTAGCTGTTGGCAAAAGAAGAACTGGCAGATCTATCAGTATTCTAGATATATATGGCTTTGAGTCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAAAGATTACAGCAACACTTCAATCGTCATTTGTTCAAGCTAGAACAGGAGGAATATATCCAAGATGGAATTGACTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAACCACTGGGGCTACTATCCTTGTTAGATGAAGAGTCTACTTTTCCAAATGGTACTGATTTAACATTTGCCAACAAGCTTAAGCAGCATTTGAATTCTAATTCATGCTTCAAAGGAGAACGAGAAAAAGCCTTCACTGTGCGTCATTATGCAGGAGAGGTCACTTATGATACAACTGCATTCTTGGAGAAGAATAGGGACCTATTGCACGTGGATTCCATCCAACTTTTATCCTCAAGCAAATGTCATCTTCCTCAGATATTTGCATCCTATATGCTTACTCAGTCTGAGAAGCCTGTAGTTGGTCCCTTGCACAAGTTAGGCGGGGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGACAATTGTTTCAACTGATGCAACGTTTAGAGAGTACCACCCCTCATTTTATTCGCTGCATTAAGCCCAATAATCTCCAATCACCTGGATCATATGAGCAAGGACTTGTGCTACAGCAGTTGAGATGTTGCGGGGTCCTAGAAGTGGTTCGAATATCCCGATCAGGCTTTCCCACTAGAATGTCTCACCAAAAGTTTGCGAAAAGATATGGTTTTCTTCTCCTTGAAAATGATGCGTCTCAAGATCCACTTAGTGTTTCTGTTGCTATTCTTCATCAGTTTAACATTTTACCTGAGATGTATCAAGTTGGCTACACAAAATTATTCTTCCGAACTGGGCAGATTGGAGTGCTCGAAGATACTAGAAATCGTACTCTCCATGGCATTTTACGTGTACAAAGTTGCTTTAGGGGTTATCAAGCTCGTTGTCTTCGCAAGGAACTCTGGAGAGGAATCACTACTCTTCAGTCATTTATTAGAGGAGAGAAAAGCAGAAGGGAGTTTGCAACTTCGCTTCAGAGACACAGAGCGGCTGTTATTATACAGAAGCACGTGAAAACAATATATGCAAGAAACAGAATGAAAATGACCACTGATGCTGCAGTTGTCATACAGTCATTTATTCGAGGATGGTTAGTCAGAAGATGCTCAGGAGATATAGGATTTTTAAAACTTGGAGGCACGAAGACTAATGAAGCAGATGAGGTTCTGGTGAAGGCCTCTTTCCTAGCTGAATTACAACGCAGGGTGCTTAAGGCAGAAGCCGGCCTGAGAGAGAAAGAAGAGGAAAATGACATCCTTCATCAACGACTTCAACAGTATGAAAGCAGATGGTCTGAATATGAACTAAAAATGAAATCCATGGAAGAAGTATGGCAAAAACAAATGAGATCCTTACAATCAAGCCTCTCCATTGCAAAGAAGAGTCTTGCTATGGATGATTCCGATAGAAATTCGGATGCTTCCGTTAATGCAAGTGAGGACAGGGAATACAGCTGGGATATTGGAAATAATCACAAACGCCAAGAAAGCAGTGGAACAAGATCCATGAGTGCTGGTTTGAGTGTTATAAGCCGGTTGGCTGAAGAATTTGAGCAAAGGAGTCAAGTGTTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAAATTGAAGCAAGTCTGAACCCAGACAGAGAGCTTAGAAGGTTAAAACAAATGTTTGAAGGTTGGAAAAAGGACTATGCAACCAGACTGCGTGAAACGAAGGTTATTTTAAATAAACTTGGAAGTGAAGATGGTTCATCAATAGAGAAAGCTAAGAAGAAGTGGTGGGGAAGAAGGAACAGTACTAGGATGAGTTGA 3534 0.4046 MSRTTSVPRAFQSIKSLPPEYKYDNNRNAGQVEKHGNVKLRSNDLIRSNGRENGVISGEVSKEANNSAGDMDLFDEESPYGGNAESFEDRPPYANEDSISALLPQPSISTSSRESRWSDTTPYASKKKLQSWFQLSNGDWELVKIISASGAESVISLPDGKVSKVKDESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQHRYNQNMIYTKAGPVLVAVNPFKKVPLYGIDYIEAYKRKANESPHVYAITDSAIREMTRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEHEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQSVEDYKYLRQSNCYSITGVDDAEEFRIVMDALDVVHISKGDQENVFAMLAAVLWLGNISFTVIDNENHIQAVEDEGLFSTAKLIGCEIEDLKLTLSTRKMKVGNDIIVQKLTLSQASDARDALAKSIYACLFDWLIEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVRHYAGEVTYDTTAFLEKNRDLLHVDSIQLLSSSKCHLPQIFASYMLTQSEKPVVGPLHKLGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAKRYGFLLLENDASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARCLRKELWRGITTLQSFIRGEKSRREFATSLQRHRAAVIIQKHVKTIYARNRMKMTTDAAVVIQSFIRGWLVRRCSGDIGFLKLGGTKTNEADEVLVKASFLAELQRRVLKAEAGLREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSDRNSDASVNASEDREYSWDIGNNHKRQESSGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQIEASLNPDRELRRLKQMFEGWKKDYATRLRETKVILNKLGSEDGSSIEKAKKKWWGRRNSTRMS 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00137 1177 ProSiteProfiles IQ motif profile. 878 905 IPR000048 GO:0005515
Vifa3g00137 1177 ProSiteProfiles IQ motif profile. 925 954 IPR000048 GO:0005515
Vifa3g00137 1177 Gene3D - 361 420 - -
Vifa3g00137 1177 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 897 IPR027417 -
Vifa3g00137 1177 SMART iq_5 852 874 IPR000048 GO:0005515
Vifa3g00137 1177 SMART iq_5 875 897 IPR000048 GO:0005515
Vifa3g00137 1177 SMART iq_5 901 923 IPR000048 GO:0005515
Vifa3g00137 1177 SMART iq_5 924 946 IPR000048 GO:0005515
Vifa3g00137 1177 PANTHER MYOSIN 172 1168 - -
Vifa3g00137 1177 FunFam Unconventional myosin-XIX 549 741 - -
Vifa3g00137 1177 Gene3D - 784 852 - -
Vifa3g00137 1177 ProSiteProfiles IQ motif profile. 855 882 IPR000048 GO:0005515
Vifa3g00137 1177 Coils Coil 971 1019 - -
Vifa3g00137 1177 ProSiteProfiles Myosin motor domain profile. 179 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 Gene3D - 855 902 - -
Vifa3g00137 1177 Gene3D - 903 945 - -
Vifa3g00137 1177 SMART MYSc_2a 173 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 Gene3D - 547 741 - -
Vifa3g00137 1177 Gene3D Kinesin motor domain 182 780 IPR036961 -
Vifa3g00137 1177 FunFam Myosin heavy chain 361 417 - -
Vifa3g00137 1177 MobiDBLite consensus disorder prediction 100 120 - -
Vifa3g00137 1177 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 Gene3D Myosin VI head, motor domain, U50 subdomain 422 719 - -
Vifa3g00137 1177 Pfam IQ calmodulin-binding motif 926 943 IPR000048 GO:0005515
Vifa3g00137 1177 Pfam IQ calmodulin-binding motif 879 896 IPR000048 GO:0005515
Vifa3g00137 1177 Pfam IQ calmodulin-binding motif 857 871 IPR000048 GO:0005515
Vifa3g00137 1177 MobiDBLite consensus disorder prediction 18 120 - -
Vifa3g00137 1177 Pfam Myosin head (motor domain) 181 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g00137 1177 MobiDBLite consensus disorder prediction 1038 1077 - -
Vifa3g00137 1177 CDD MYSc_Myo8 193 839 IPR036022 -
Vifa3g00137 1177 MobiDBLite consensus disorder prediction 1038 1052 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00137 Vifa-Chr3 10722165 10733279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00137 7 1175 Myosins gene family AT1G50360 75.385 0.0 1792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00137 - - gmx:100801124 2070.43