Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00131 ATGTCTGAAGCACCGTCTCAGCCACCACTCCCTTCCTCCGAGACACCTCCTCCTTACTGGTGCTACCACTGCGACAAACACGTCTCCGTTGAAACGGTCGCTAATGTCCCTGACGTCATCTGCGGCGATTGCAAAAACGGCTTCGTCGAATCCATCTCCATCTCCACACCTTCTCGAGCTCGCTCACCGTCCTCTTCCTCCGATGATCCTTACTTTGGTTCGCAATTTCTTCAGGTTCTTCGCCTAATCGCTGAATCGTCGCGTGAAGACGACGCGTCTCCTCCCCCTCCTCCGAGTCGTTCACCTGACGACGGTATTCTCAGAATCGAACTCGGTGGTTGGAATCACCACAACGACGAAGAGGATGATGATGCGTTTCACACGGACGGTGAAGATGATGAAGGTAGCGTCGAGGAGGTGGAAGATCGACCTGGTAACGAAGATCCGAATATGGACGATGAAGATATGAGGCGAAGGAGACGCGATCTGTTACGGCATCGAATTAGGGATTTGGCGACGCGAACACGAAGTATGCAGAATCGGATCTTGGATTGGGCGGAGATTTTGATGGGATTGGAAGATAATTCAATTGAATTTCGTCTTCAGGGACCGGAATCGGAGCGGTATGTCGGAAATCCTGAGGATTACGTTGACGCGGCGGATTATGAAGCGTTGCTGCAGACGCTGGCGGAGAGTGACGGAAGCGGGAGGAGAGGGGCTCCGCCGGCGTCAAAGTCTGCTGTGGAAGGTTTACCGACGGTTAAGATTGCATTGGAGAGTGAAGTGGTTGCTTGTGCTGTGTGTAAGGATATGCTTGGTGTTGGAGATATGGCGAAGAGATTGCCGTGTGGGCATGAGTATCATGGAGATTGCATTGTTCCATGGTTGACTAGTAGAAATTCTTGTCCTGTTTGCAGGTTTGAGCTTCCAACGGATGATAAAGAGTATGAAGAAGAGAGAGCTTCGGGTTCGGGGCGTGGCGGAGCTTCCACCGTTTGA 999 0.5195 MSEAPSQPPLPSSETPPPYWCYHCDKHVSVETVANVPDVICGDCKNGFVESISISTPSRARSPSSSSDDPYFGSQFLQVLRLIAESSREDDASPPPPPSRSPDDGILRIELGGWNHHNDEEDDDAFHTDGEDDEGSVEEVEDRPGNEDPNMDDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIEFRLQGPESERYVGNPEDYVDAADYEALLQTLAESDGSGRRGAPPASKSAVEGLPTVKIALESEVVACAVCKDMLGVGDMAKRLPCGHEYHGDCIVPWLTSRNSCPVCRFELPTDDKEYEEERASGSGRGGASTV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00131 332 FunFam E3 ubiquitin-protein ligase RING1-like 228 312 - -
Vifa3g00131 332 MobiDBLite consensus disorder prediction 86 158 - -
Vifa3g00131 332 MobiDBLite consensus disorder prediction 124 149 - -
Vifa3g00131 332 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
Vifa3g00131 332 ProSiteProfiles Zinc finger RING-type profile. 265 306 IPR001841 -
Vifa3g00131 332 Pfam Zinc finger, C3HC4 type (RING finger) 265 305 - -
Vifa3g00131 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 147 310 - -
Vifa3g00131 332 SUPERFAMILY RING/U-box 259 312 - -
Vifa3g00131 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 312 IPR013083 -
Vifa3g00131 332 SMART ring_2 265 305 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00131 Vifa-Chr3 10568923 10569921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00131 176 318 C3H Transcription Factor Family AT5G01980 48.000 3.07e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00131 - - gmx:100802200 447.973