Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00118 ATGTCATCTCAACAAGCTCTCAAGAGGACCCTTCCATCATCTTTTCATTCATCTGAAACAAGGGCTTTTCTACCTTCATCGTTTGCACCTAATAACAGAGTAAGCAACTTAAGTAGCAGTCAGCTTCATGATGCATACAAGAGTCGTCACCACGGAGTAGGACCTAGCACGTCCAGTGAGAAGGGCTTTTTTCGTGACAATTTTGGCAGAGGCAATGACGGAGATCGTTTCATGAATCAGAATGGTGGGACCAGAGCTCTTCCTCCATCTTTGATGATTGGAAAGGCAATAACTCCACCATTTGCTACTTCTAGTGAACCAGCATACCGTTCTGGAGTAGGTGATGAAAGGGCTCCTGAAACTGATGAGAGACTAATTTATGAAGCAGCATTACAGGACATCAGTCAACCATTAAAAGAAGCCGATTTACCTGCTGGCATAATGGCTGTCCCTCTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAACAATTGCTCTCATCCTAATGCAAAGGCAAACACAGATAAAATGGAAAACAGATGATACATTCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGATAATGGTAGTATTGATGTTGAAAAGCTTAAAAAGGATGAAGAATCCAATGATACAAAACCTATTATGGAACCGAGTAGTTCAACACGGGCACCAAGTAGGAAAAGGCCTGCTGCTGGTACATTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAGCTTGAAGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTGATCTTTCACGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGACGTGGTTCTCACAACATACGCACTTGTGACTAATGAAGTTCCCAAGCAACCTTTAGTTGAGGATGATGATATTGATGAAAAAGATGGTGAAAATTTTGGCTTATCCTCTGATTTTTGTGTAAAAAAAAAGAGGAAAAAGACATATAATGGAAGTACGAAGGGTAAAAAAGGTAAAAAGGGAATAGACGGTTCTTCATTTGATCCTGCTTCTGGCGCTCTTGCAAAAGTAGGTTGGTTTAGGGTCATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACGCCTATTCAGAATACTATTGATGATTTATATAGCTACTTTAGGTTTCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACACTTCATTAAAAGTCCCAATATCCAGAAATTCAATTCAAGGTTACAAAAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCGATAATAACTTTACCTCCTAAAACAATTAATTTGAGTAAGGTGAATTTCTCGCATGAAGAGCGGGCCTTCTACAAAAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCCGGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATGATCCACCCGACGATGCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAACATTTGACAGGCGACGATAATATGTGCCCTGCAAATCATTGTAAAGAACAAATTGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTAAGGAGTTGCATCTCTGACGATCCTAGTGGCAGTAGTTCTGGAAGTTCAAGCCTTGTTGATTATTCAATAGTACAAAATAGTGATTACAGCTCATCTAAAATCAAAGCCGTCCTTGAAGTTCTGCATTCAAGTTGCAGATTGAAGTCTACTTCTGGCAATAGAGATTCACCGCCTTCTGATTTTTCAGATAATTCAGATATTGAAGATTTTGATTCAGATGTCAAGGTTACAAAAGTCTCAAGAAATTTTTCAGAGTGCACAACTGGTGGACCGCTAAAGGCTATAATTTTTTCTCAATGGACTACCATGTTGGACTTAGTTGAGACATCAATGGAGCAGTCTGGCATAAAATACAGGAGACTTGATGGTAGGATGACTCTGACTGCGAGGGATAGAGCTGTTAAAGATTTCAATACTGATCCTGAGATTACTGTAATGCTGATGTCTTTAAAAGCAGGAAACCTTGGTTTGAATATGGTTTCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACTCGGATCACCATAAAAGATACAGTTGAAGATAGAATATTGGCTCTTCAGGATGAAAAAAGAAAAATGGTGGCATCTGCTTTCGGTGAAGACCATGCTGGCGGTTCTGGAACTCGGCTTACAGTTGACGATCTTAAATATCTTTTCATGGTATAG 2697 0.4019 MSSQQALKRTLPSSFHSSETRAFLPSSFAPNNRVSNLSSSQLHDAYKSRHHGVGPSTSSEKGFFRDNFGRGNDGDRFMNQNGGTRALPPSLMIGKAITPPFATSSEPAYRSGVGDERAPETDERLIYEAALQDISQPLKEADLPAGIMAVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQTQIKWKTDDTFNHKAEALNLDDDDDNGSIDVEKLKKDEESNDTKPIMEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELEEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYALVTNEVPKQPLVEDDDIDEKDGENFGLSSDFCVKKKRKKTYNGSTKGKKGKKGIDGSSFDPASGALAKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYTSLKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTINLSKVNFSHEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICFVCNDPPDDAVISMCGHVFCYQCVSEHLTGDDNMCPANHCKEQIGEDLVFSKATLRSCISDDPSGSSSGSSSLVDYSIVQNSDYSSSKIKAVLEVLHSSCRLKSTSGNRDSPPSDFSDNSDIEDFDSDVKVTKVSRNFSECTTGGPLKAIIFSQWTTMLDLVETSMEQSGIKYRRLDGRMTLTARDRAVKDFNTDPEITVMLMSLKAGNLGLNMVSACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00118 898 SMART ultradead3 148 460 IPR014001 -
Vifa3g00118 898 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g00118 898 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 443 IPR014001 -
Vifa3g00118 898 MobiDBLite consensus disorder prediction 217 260 - -
Vifa3g00118 898 ProSiteProfiles Zinc finger RING-type profile. 597 636 IPR001841 -
Vifa3g00118 898 SMART helicmild6 757 840 IPR001650 -
Vifa3g00118 898 Gene3D - 647 897 IPR027417 -
Vifa3g00118 898 MobiDBLite consensus disorder prediction 45 65 - -
Vifa3g00118 898 Gene3D - 128 210 IPR038718 -
Vifa3g00118 898 Gene3D - 360 494 IPR038718 -
Vifa3g00118 898 MobiDBLite consensus disorder prediction 700 719 - -
Vifa3g00118 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 481 IPR027417 -
Vifa3g00118 898 Pfam Helicase conserved C-terminal domain 745 840 IPR001650 -
Vifa3g00118 898 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 245 332 - -
Vifa3g00118 898 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 78 897 - -
Vifa3g00118 898 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 893 IPR001650 -
Vifa3g00118 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 897 IPR027417 -
Vifa3g00118 898 Pfam SNF2-related domain 155 558 IPR000330 GO:0005524|GO:0140658
Vifa3g00118 898 Pfam Zinc finger, C3HC4 type (RING finger) 596 641 - -
Vifa3g00118 898 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 646 IPR013083 -
Vifa3g00118 898 Gene3D - 246 334 IPR038718 -
Vifa3g00118 898 CDD DEXDc_SHPRH-like 152 481 - -
Vifa3g00118 898 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 362 493 - -
Vifa3g00118 898 CDD SF2_C_SNF 720 849 - -
Vifa3g00118 898 ProSitePatterns Zinc finger RING-type signature. 612 621 IPR017907 -
Vifa3g00118 898 MobiDBLite consensus disorder prediction 227 243 - -
Vifa3g00118 898 SUPERFAMILY RING/U-box 595 646 - -
Vifa3g00118 898 SMART ring_2 597 635 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00118 Vifa-Chr3 10185310 10192694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00118 61 798 RAD5 or RAD16-like Gene Family AT1G50410 61.942 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g00118 SNF2_N 2.2e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00118 - - gmx:100795142 1385.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00118 3 10185310 10192694 Vifa3g00118 3 10185310 10192694 ECH