Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00116 ATGCTTGATAATGTGGACAATATTCATCATTTCATCGACTCAACTTGGAGACTATGTGCTCATCTAGGTTCTTGGGTTTCTGGGTTAATTTCAAAGCCTAACAAAAAGGTTGGCTCAATTTCTAGGTTGGCCGAGGAAAGAGAAAATTGTTATCTAGATTCCATGGATACGGCGTATATAGATATTAGTTCGTCGGATGATGATTTGGAGATATTAGATGATCATCATGGTAGAATTCTCCCAGGATGGGCTGCTTCTGAAAGGAATTCAGATTCAAGAAGGGCAAATGGTTCAAACGCAAGCTCTTCTAACAATTTTCGTTCACTAGTTAGGCCCCATAATCGACTTGGTCCTAGCAATGGAAACACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATTCTCATGGAACCGATTATGAGAAAATGTCATCTCAACAAGCTCTCAAGAGGACCCTTCCATTATCTTATCAACCCATCTCAACAAGCTCTCAAGAGGACCCTTCCATTATCTTATCAACCTGGTCCTAG 534 0.4026 MLDNVDNIHHFIDSTWRLCAHLGSWVSGLISKPNKKVGSISRLAEERENCYLDSMDTAYIDISSSDDDLEILDDHHGRILPGWAASERNSDSRRANGSNASSSNNFRSLVRPHNRLGPSNGNTSQHQTVNSRISNSHGTDYEKMSSQQALKRTLPLSYQPISTSSQEDPSIILSTWS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00116 177 MobiDBLite consensus disorder prediction 88 148 - -
Vifa3g00116 177 MobiDBLite consensus disorder prediction 89 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00116 Vifa-Chr3 10184535 10185236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00116 78 158 RAD5 or RAD16-like Gene Family AT3G20010 40.741 1.72e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00116 - - lja:Lj5g3v2263880.2 126.331