Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00107 ATGAATTGTCTTGTGATTTGTCAATCTAGATGGTGGATAGTGACAATTGTGTTGTATACATGTGTTTTCATTCCATTGAAGCAACTCAAGAGATCACTTGCAAACATGTTTGGCCAAACTCTCTTGTTTCTCTTCTCTTGTGAAAGCAAAGAGATTGAGTTTCCAGCTCCATCTCTACCTGTAGCGTGGTTCGAGGATTTGAAAGGAGATGGAGATGAAGAAGAGATTTGCTCCATTTGCTTGGTAGAGTTTGAAGGAGAAGATGCAGTGAGCATGTTGAGGAGATGTAAGCATGTGTTTCATTTTAATTGCATTGAGCAATGGCTAGAACGAAGTCAATTCTCGTGTCCACTTTGTAGATCTTTTTTATTTTCCTAA 378 0.3862 MNCLVICQSRWWIVTIVLYTCVFIPLKQLKRSLANMFGQTLLFLFSCESKEIEFPAPSLPVAWFEDLKGDGDEEEICSICLVEFEGEDAVSMLRRCKHVFHFNCIEQWLERSQFSCPLCRSFLFS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00107 125 Pfam Ring finger domain 76 120 IPR001841 -
Vifa3g00107 125 PANTHER RING ZINC FINGER PROTEIN-RELATED 49 122 - -
Vifa3g00107 125 SUPERFAMILY RING/U-box 70 123 - -
Vifa3g00107 125 ProSiteProfiles Zinc finger RING-type profile. 77 120 IPR001841 -
Vifa3g00107 125 SMART ring_2 77 119 IPR001841 -
Vifa3g00107 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00107 Vifa-Chr3 9478829 9479206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00107 8 125 C3H Transcription Factor Family AT4G38140 41.525 1.24e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00107 - - pvu:PHAVU_007G012000g 157.918