Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00101 ATGCCTCAGCTTCGTAGTGGAGTGCGACGTGCTCGTGCAGCGCCCGTAACCGAAAAACAATCGGAACCACCGGTTAAGAAAAACACGCCGGCGCCGAGGGGGAGGGGTAGACCAAGAACTAGATTGGTCGCCAAGAAATCTGAGCCGTTGACACAACAGTTATTGGTGGTTGAAGAAGGTGTGGGTGTGATGGGTGATGAAAGAGTTGGTGTCAGTGCTAATAAGGATAAAGGTGTTGCTGCTGTTCCAGAAGAAGATGCCAACTCTCCTCCTCTTCCAGAAAGGGTTCAAGTAGGAGGATCGCCTCTCTACAAGGTAGAAAGGAAACTTGGTAAAGGTGGATTTGGCCAAGTTTTTGTTGGTCGCCGCGAGCGTGCTAATGCTCCTGGAGCTGTGGAGGTGGCTCTGAAATTTGAACATAGAAACAGTAAAGGGTGCAACTATGGCCCTCCTTATGAGTGGCAAGTATACAACACACTTGGTGGTAGTCATGGAATACCTAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTCATGGACATTCTTGGTCCAAGTTTGTGGGATGTATGGAATACCTCAGGCCAGTCGATGTCTCCTGAAATGGTCTCATGTATAGCTGTTGAGTCATTATCAATACTTGAGAAGTTGCACGCAAAAGGTTATGTACACGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCCAACACAGCACAGGAGAAGAAATTGTTTCTTGTTGATCTTGGTTTAGCAACAAAGTGGAAAGATTCATCAAGTGGAAAGCATACTGAATATGATCAACGCCCTGACATGTTTAGAGGGACTGTTCGATACGCTAGTGTTCATGCTCATTTGGGAAGAACTGCCAGTAGAAGAGATGATCTTGAATCACTTGCATACACACTAATCTTCCTTCATAGGGGCCGATTGCCATGGCAAGGTTTCCAGGGTGATGGTAAATCCTTCCTCGTTTGCAAAAAGAAAATGGGAACATCTGCCGAGATGTTGTGCTGCTTTTGCCCTGCTCCTTTTAAACAATTTCTCGAGACTGTAGTGAACATGAAGTTTGATGAAGAACCCAACTATTCCAAGCTAATATCCTTGTTTGATGGTATACTTGGACCTAATCCTGCAATGCGACCAATTAATATCGAAGGCGCTCTAAAGGTTGGGCAAAAGCGGGGTAGATTACCTGCTGATGCAGATGACGAACAGCCCAAAAAGAAGGTTCGTTCGGGGATTCCTGCTTCCCAATGGATTTCAGTTTACAATGCTAGACAACCGATGAAACAAAGGTATCATTACAATGTGGCTGATGGAAGATTAGCACAGCATATTGAGAGAGGGATTGCAGATGACCTTCTTATCAGTTGTGTATCATGTTGTTCCAATCTATGGGCACTTATCATGGATGCTGGAACTAATTATACCGCTCAAGTTTACAAGTTATCACCATTGTTTTTACACAAGGAATGGATCTTGGAACAATGGGATAAGAACTTCTACATTACTTCTATTGCAGGGGCCAATAATGGAAGCTCTGTTGTGGTGATGTCTAAAGGTACGAGGTACACTCAACAATCGTACAAAGTAAGTGAATCTTTTCCCTACAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTCACCTCAATGGGTACTGCTGGAAACCGCTGGGGTATTGTTATGTCTCGCAATGCTGGATTCAGCGATCAGGTGGTGGAGCTGGATTTCCTCTATCCGAGTGAAGGAATCCACAAACGCTGGGATAATGGTTATAGGATTACAGCAACTGCGGCTACATTGGATCAATCTGCGCTTATATTAAGTATCCCGAGGAACAGGCCTGGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTCCCCAGTGCTCATGTAAAGGAAAAATGGTCAAAAAACCTTTATCTTGCCCATTTGTGCTATGGGCGCACAGTTTGCTGA 1983 0.4418 MPQLRSGVRRARAAPVTEKQSEPPVKKNTPAPRGRGRPRTRLVAKKSEPLTQQLLVVEEGVGVMGDERVGVSANKDKGVAAVPEEDANSPPLPERVQVGGSPLYKVERKLGKGGFGQVFVGRRERANAPGAVEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDILGPSLWDVWNTSGQSMSPEMVSCIAVESLSILEKLHAKGYVHGDVKPENFLLGQPNTAQEKKLFLVDLGLATKWKDSSSGKHTEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGFQGDGKSFLVCKKKMGTSAEMLCCFCPAPFKQFLETVVNMKFDEEPNYSKLISLFDGILGPNPAMRPINIEGALKVGQKRGRLPADADDEQPKKKVRSGIPASQWISVYNARQPMKQRYHYNVADGRLAQHIERGIADDLLISCVSCCSNLWALIMDAGTNYTAQVYKLSPLFLHKEWILEQWDKNFYITSIAGANNGSSVVVMSKGTRYTQQSYKVSESFPYKWINKKWKEGFHVTSMGTAGNRWGIVMSRNAGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATLDQSALILSIPRNRPGDETQETLRTSQFPSAHVKEKWSKNLYLAHLCYGRTVC 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00101 660 ProSitePatterns Protein kinases ATP-binding region signature. 110 137 IPR017441 GO:0005524
Vifa3g00101 660 MobiDBLite consensus disorder prediction 1 47 - -
Vifa3g00101 660 PANTHER CASEIN KINASE-RELATED 104 622 - -
Vifa3g00101 660 FunFam casein kinase 1-like protein HD16 75 416 - -
Vifa3g00101 660 SMART serkin_6 104 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00101 660 SUPERFAMILY Protein kinase-like (PK-like) 104 384 IPR011009 -
Vifa3g00101 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vifa3g00101 660 CDD STKc_CK1 104 374 - -
Vifa3g00101 660 Pfam Protein kinase domain 104 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g00101 660 Gene3D Transferase(Phosphotransferase) domain 1 74 414 - -
Vifa3g00101 660 ProSiteProfiles Protein kinase domain profile. 104 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00101 Vifa-Chr3 8982812 8987469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00101 217 406 MAP Kinase Kinase Kinase AT5G50180 24.479 1.38e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vifa3g00101 Pkinase 2.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00101 - - gmx:100819969 1106.66