Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00097 ATGGTATCGGCTACAATTAGGCGAATCGTGTCACCCTGTTGGAGGCCATCTAGTGAGGGCGATTCTAGTAGGTATGGCGATGGGAGTGGACGCTCCGATGGTTTGTTGTGGTATAAAGATTCTGGAAGACATGTGACCGGTGAATTCTCAATGGCTGTTGTTCAAGCAAACAATTTGTTGGAGGATCATAGCCAGGTTGAATCAGGACCCATGAGCTTGATTGAAGGAAGTCCTCATGGTACTTTTGTTGGTGTTTATGATGGCCATGGAGGTCCGGAAACTGCTCGTTTTGTCAATGATCGCCTATTTAAACATATCAAGAAGTTCACTGCAGAAAATCAGGCAATGTCAGCTGATGTTATCACAAAAGCATTTTTGGCAACGGAAGAAGAATTTCTAGCTCTAGTGAAGAAACAATGGCAACACAAGCCACAGATAGCGTCAGTTGGAGCTTGCTGTTTGGTAGGCGTAATATATAACGGAGAGCTCTATACTGCAAATGCAGGAGATTCTCGAGCAGTGTTAGGTAGAATGGATGAGGCTACAAAAGAGGTTAAAGCGGTTCAACTATCTTATGAGCACAATGCTAGCCTGGAATCTGTCAGAGAAGAGCTACGCTCATTGCATCCCGATGATCCACAGATTGTAATGATGAAACACACGGTCTGGCGCGTGAAGGGTCTCATTCAGATTTCAAGATCCATTGGCGATGCTTATCTAAAGAAGAAAGAGTTTAACCAAGCACCACTGTTGCCAAAATTTCGGCTCGCGGAACCCTTTGAAACGCCAATCCTTAAAGCTGAACCAACAATACAAGTACAGAAACTAGAACCTTGTGATCAATTTCTTATATTTGCATCAGATGGATTATGGGAGCACATGAGCAATCAAGAAGCAGTTGACATTGTCCAAAGCGGTGCACGCAATGGAGTAGCGAAGAAACTTATCAAATCGGCGCTTTGTGAAGCTGCAAAGAAAAGAGAAATGAGATACTCAGACTTGAAAAAGATTGATCGTGGCGTACGGAGACATTTCCATGACGACATCACGGTCATAGTTGTGTATCTTGATTCGCATAATTCGCGAGCTCCCACCGTATCAATTAAAGCAGGTGGTGGTGATTTTGGTACTGGTATTGTAAATGGCTAG 1149 0.4369 MVSATIRRIVSPCWRPSSEGDSSRYGDGSGRSDGLLWYKDSGRHVTGEFSMAVVQANNLLEDHSQVESGPMSLIEGSPHGTFVGVYDGHGGPETARFVNDRLFKHIKKFTAENQAMSADVITKAFLATEEEFLALVKKQWQHKPQIASVGACCLVGVIYNGELYTANAGDSRAVLGRMDEATKEVKAVQLSYEHNASLESVREELRSLHPDDPQIVMMKHTVWRVKGLIQISRSIGDAYLKKKEFNQAPLLPKFRLAEPFETPILKAEPTIQVQKLEPCDQFLIFASDGLWEHMSNQEAVDIVQSGARNGVAKKLIKSALCEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVYLDSHNSRAPTVSIKAGGGDFGTGIVNG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00097 382 FunFam Phosphatase 2C family protein 37 365 - -
Vifa3g00097 382 Pfam Protein phosphatase 2C 75 326 IPR001932 -
Vifa3g00097 382 SUPERFAMILY PP2C-like 59 358 IPR036457 -
Vifa3g00097 382 CDD PP2Cc 49 356 IPR001932 -
Vifa3g00097 382 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169
Vifa3g00097 382 Gene3D - 38 363 IPR036457 -
Vifa3g00097 382 PANTHER PROTEIN PHOSPHATASE 35 355 IPR015655 GO:0004722|GO:0006470
Vifa3g00097 382 SMART PP2C_4 42 354 IPR001932 -
Vifa3g00097 382 ProSiteProfiles PPM-type phosphatase domain profile. 48 356 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00097 Vifa-Chr3 8547907 8549975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00097 3 376 PP2C-type Phosphatase Gene Family AT3G12620 73.947 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00097 K01102 - gmx:100785413 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00097 3 8547907 8549975 Vifa3g00097 3 8547907 8549975 ECH
Vifa3g00097 3 8547907 8549975 Vifa6g02763 6 933274308 933281342 ECH