Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00090 ATGGCCTCTAAAAACACATCTTCTTCACTTTCTGAATTCAACTTGAAAACACATGCATACAACCTTTCATTATCATCAACAACTGCCAATTGTTATGGAAGTCATGTTGCTGGAATCAAAAAAGCAATGAAGATTCTAGAAACTCAATTTGGGAATCCACATGCAGCATCATCACCATCAATTAATAATAATGTTGTTGGTGTCATCAACGACAACAATATGAAGATGGTGATGAATGATACTTCTTATCATCCCAATCTCACTACAGACTCATCTAAATCATATAATATGTCATCTCGGACAATCGGTGCCAGTGTTAATGGTGATGGTAATCATGTTCATGTTGATATTGATCATAACAATATCAACAAGAAGAAGGACAAGAAAAATATTGATGATGGCAGAATGCACAGTTTAGCATGTAAGAAATATGGACCGTACATCTGCCCAAAGTGCAACCAAGTGTTTGTTACATCACAAAAATTTGCTTCTCATGCATCAAGTCATTACAAGTTCGAAAGTAAAGAAGAGAGGAAAAAGAGATACATGTCTAGAATTCGAAAGAGACCACGTCTTCAGATTCAAAAGCTCAACGATGGAACAACTACTTTTGTTCCTGTTTCTTCTTTGACTGCTCATCCACCTGTTGCTTCAGTCAATAATAATGCTCATAATCAGATACTTTCACCTACTTCAATTGGAGTAAAAATAAAATTGGAGTCTGCAAATAATTGA 735 0.3524 MASKNTSSSLSEFNLKTHAYNLSLSSTTANCYGSHVAGIKKAMKILETQFGNPHAASSPSINNNVVGVINDNNMKMVMNDTSYHPNLTTDSSKSYNMSSRTIGASVNGDGNHVHVDIDHNNINKKKDKKNIDDGRMHSLACKKYGPYICPKCNQVFVTSQKFASHASSHYKFESKEERKKRYMSRIRKRPRLQIQKLNDGTTTFVPVSSLTAHPPVASVNNNAHNQILSPTSIGVKIKLESANN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00090 244 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Vifa3g00090 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00090 Vifa-Chr3 8123370 8124104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00090 133 191 C2H2 Transcription Factor Family AT2G18490 61.017 9.48e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g00090 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00090 - - mtr:112419833 187.963