Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00089 ATGGATTTCAAGAACACACCTTCATCATCATCATCAATAGCTACTGATGATTATGGTAGTCATGCTCCTGGAATTCGGAAGGCAATGAAAATTCTTGAAGCTCAATTTCGTCATTCGAATGCACCATCATCCGTTCATCATTATGAGGATGTCATCAACATTTACAACAACAACATGATGAAGAATGTTTTTAATGATGTTTATAATCCTAATCAGTTCTTCGCAAGATCATCACAATCACATGAGCCATCATCCGATCAGACCGTTGTTGCTCCTACTGATACTGATGCTTCGGTCGGGTTTCATTTCAAGAAGAAGAATGTTGATGATGGTAGAATCCACAGTCTACCACATAAGAAATACGGACCCTACACATGTCCAAAGTGCAACCAAGTGTTAGCTACTTCACAAAAATTTGCTTCTCATGTGACGTCAAATCACTACAAATTTGATACTGCCGAGGAGAAAAAAAAGAGATACATGTCTAGGAACAGGAACAAACCAAGTCTCCGAATTCACAAGCTCGATAATCGACAAACTACTTTTGTTCCCGTTGTTCCATCTATTGATCAGCCACTTGTTGCTTCTATAGTCAATAATGATGATCAAAATCAAAGTTCTCCTTTGGCGTTTCCTCTCAATAGAGTTAAACTCGAATTTGATCTTATAGATGGTTAA 678 0.3791 MDFKNTPSSSSSIATDDYGSHAPGIRKAMKILEAQFRHSNAPSSVHHYEDVINIYNNNMMKNVFNDVYNPNQFFARSSQSHEPSSDQTVVAPTDTDASVGFHFKKKNVDDGRIHSLPHKKYGPYTCPKCNQVLATSQKFASHVTSNHYKFDTAEEKKKRYMSRNRNKPSLRIHKLDNRQTTFVPVVPSIDQPLVASIVNNDDQNQSSPLAFPLNRVKLEFDLIDG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00089 225 ProSitePatterns Zinc finger C2H2 type domain signature. 126 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00089 Vifa-Chr3 8078399 8079076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00089 110 177 C2H2 Transcription Factor Family AT5G22990 59.155 1.64e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g00089 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00089 - - mtr:112419833 171.785