Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00068 ATGTATCGTCCTCCTTCTTCTTCTGGTTCAACTTCTTCCTCCTCTTCTCAGCAACAACAAAGCTCCATAAGCCAGACAGGTCTCACAAGATACGGTTCTGCACCCGGTTCTCTCCTCACCAGCACGGTTGATGCTGTCTTAGGAGATTCGCGCCTTCTCCCGGGGACTGGACATTATTTCTCCGGTGACTCCAATCACCAGCAACAACAGCAACAGCAGCAGCAGCAACAACATCAGCAAAGATCTTCTTACGAAGGCTTTGACGGATCATCTTTGGTCCGTCAGAAAAGCTCTCCCGCCGGTTTCCTCAACCATCTCGCCACTCTCAATCATAATAATAGCGCGGGGTTCACAATCACGCTAGGCGGAAATGGAGGATCAAGATTGAAGTCTGAATTGAGCTTTACTGGAGGAGGACAAGGACAAGAATGTCTTTCTAGAATTTCCGAAAATGGCGTTGATTATGCTGCAGGAAATGGATCATTGCATAGTAGTAACTGGGGTGTAGGACCTGATAATAACAATAATAATAATAATAATAACAACCATAGCAATTCGAATTCTATAGTGTTTTCTTCTTCTGCTTCTCAAAATCAAACTAATAATAAGCGTAGAAACGACGACGATCCTGATCTTCTTCTTCATTGCCTCAACGCCCTCGAAACTCAGTATAGTCTTCCACAAACTTCTATGGAGATGGACAAGCTTATGCATATTCCACAAGATTCCGTCCCTTGTAAAATCCGCGCCAAACGTGGCTGTGCCACGCATCCCCGAAGCATTGCCGAACGGGAGAGAAGAACTAGAATAAGTGGAAAATTGAAGAAATTGCAGGATCTTGTGCCTAATATGGATAAGCAAACAAGTTATTCAGACATGCTAGATTTGGCAGTTCAACACATCAAAGGTCTTCAAACTCAAGTTCAGAAACTTCACGAAGATCTTGAGAGTTGCACTTGCGGATGCAAACAAAGTACATAA 981 0.4383 MYRPPSSSGSTSSSSSQQQQSSISQTGLTRYGSAPGSLLTSTVDAVLGDSRLLPGTGHYFSGDSNHQQQQQQQQQQQHQQRSSYEGFDGSSLVRQKSSPAGFLNHLATLNHNNSAGFTITLGGNGGSRLKSELSFTGGGQGQECLSRISENGVDYAAGNGSLHSSNWGVGPDNNNNNNNNNNHSNSNSIVFSSSASQNQTNNKRRNDDDPDLLLHCLNALETQYSLPQTSMEMDKLMHIPQDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQTQVQKLHEDLESCTCGCKQST 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00068 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 304 IPR011598 GO:0046983
Vifa3g00068 326 SMART finulus 260 310 IPR011598 GO:0046983
Vifa3g00068 326 MobiDBLite consensus disorder prediction 166 210 - -
Vifa3g00068 326 MobiDBLite consensus disorder prediction 60 95 - -
Vifa3g00068 326 Gene3D - 255 324 IPR036638 GO:0046983
Vifa3g00068 326 MobiDBLite consensus disorder prediction 54 95 - -
Vifa3g00068 326 MobiDBLite consensus disorder prediction 166 201 - -
Vifa3g00068 326 Pfam Helix-loop-helix DNA-binding domain 259 305 IPR011598 GO:0046983
Vifa3g00068 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 320 IPR036638 GO:0046983
Vifa3g00068 326 FunFam Transcription factor bHLH130 family 255 324 - -
Vifa3g00068 326 CDD bHLH_AtbHLH_like 259 311 IPR045239 -
Vifa3g00068 326 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 320 - -
Vifa3g00068 326 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00068 Vifa-Chr3 5869604 5871280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00068 27 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 43.646 2.72e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g00068 HLH 9.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00068 - - mtr:11440758 446.432