Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00064 ATGGTGAACATGATGGAATGGCAGAAACAAGTTCAGAACGGGAATGTCGACGCGATGTACGTCAAAGTCATGACTGATGAACAATTGGAAACTCTTCGGAAACAGATTGCTGTTTATGCTACCATCTGTGAACAGCTTGTTGAGATGCATAAAACTCTCTCTGCTCAACAAGATCTTGCAGGGGTTAGGCTGGGAAATATATACTGTGATCCATTGATGGCATCTGGTCACAAAATCACATCAAGACAGAGGTGGACTCCTACACAGGATCAGCTCCAGATTCTCGAACGCATATTCGATCAGGGAAATGGAACTCCGAGCAAAGAAAAAATCAAGGAGATTGCTACTGAGCTAAGCCAGCATGGTCAGATATCTGAAACAAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCGAAAAGAAAGATGCAAAACGGGGGAACTAGTAACACTGAATCAGAGGTAGAGACGGAGGTTGATTCCAAAGATAAGAAGACAAAACCAGAGGAATTTCAGTCTCATCAAAATGTTGCTGCAGGGGATGAAAATTTGTGCTTCCAGAACCCTGAAAAAGGATCTGAATTGCAGTACTTGAATCCAGATTCTAACAAAACGTATTCAATGTTTCAATCGGATGGTCACATAAGATCTTCAAGAAATTTGAGTGGTGCCGGTGTGTCTCTTTATGATGAAGTGCTATCAAACTCAAGGAATGATTATCTAGCTGGAAAAATGGAAGTATCTGGGGGCTACAATTTATACCAGCAAACAGATGACTATAATTTGGCAGGTTGA 798 0.4098 MVNMMEWQKQVQNGNVDAMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVRLGNIYCDPLMASGHKITSRQRWTPTQDQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFQSHQNVAAGDENLCFQNPEKGSELQYLNPDSNKTYSMFQSDGHIRSSRNLSGAGVSLYDEVLSNSRNDYLAGKMEVSGGYNLYQQTDDYNLAG 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00064 265 SMART HOX_1 80 147 IPR001356 GO:0003677
Vifa3g00064 265 CDD homeodomain 82 144 IPR001356 GO:0003677
Vifa3g00064 265 Gene3D - 83 148 - -
Vifa3g00064 265 SUPERFAMILY Homeodomain-like 81 145 IPR009057 -
Vifa3g00064 265 MobiDBLite consensus disorder prediction 156 172 - -
Vifa3g00064 265 MobiDBLite consensus disorder prediction 140 172 - -
Vifa3g00064 265 Pfam Homeodomain 82 142 IPR001356 GO:0003677
Vifa3g00064 265 ProSiteProfiles 'Homeobox' domain profile. 78 143 IPR001356 GO:0003677
Vifa3g00064 265 PANTHER WUSCHEL-RELATED HOMEOBOX 13 8 262 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00064 Vifa-Chr3 5366280 5369176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00064 4 265 Wox Gene Family AT4G35550 50.667 9.69e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa3g00064 Homeodomain 1.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00064 - - gmx:100815539 375.941