Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00056 ATGAAGAGAGAAAGAGAAAGTGATCATCATAATACTAATAGCATAACCATGGCTAAATACTTGATGTATCTTTCTGGTGGAGCTCAACAATTTGATCAAGTGAATTACTCTTCAAATTTCAACAACCGCGTGTTCGAGTGCAAGACATGTAAACGACAGTTTTCGTCGTTTCAAGCATTGGGAGGACATCGTGCGAGTCACAAGAAACCGAGGTTGATGGAGATGAATAGTGATGGTGATGGTGGAATATTTACAACAACAACAAAGACTAAAACACATGAATGTTCAATTTGTGGATTGGAATTTTCAATAGGTCAAGCTTTGGGTGGTCACATGAGGAGACACAGAAGAGTTTCGAATAATTCAAACGGAAATATGAACACTTTTATCAATAATACTGCAACTACTAATAATAATAATAGTAATAATAGTAGTTGCAGTACGGTTGATAATAATACTAATATTGATCTACCAAAGAGGAAAAAGGTGAACATCAAGAGATTTTTGTCTCTGGATTTGAATCTAACACCTTTAGAGAATGATTTGAAGATTTTGAAGATTGGACAATCAACTCCTAATTTGGTGGATTGTTTCAATTGA 600 0.3467 MKRERESDHHNTNSITMAKYLMYLSGGAQQFDQVNYSSNFNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEMNSDGDGGIFTTTTKTKTHECSICGLEFSIGQALGGHMRRHRRVSNNSNGNMNTFINNTATTNNNNSNNSSCSTVDNNTNIDLPKRKKVNIKRFLSLDLNLTPLENDLKILKIGQSTPNLVDCFN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00056 199 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Vifa3g00056 199 Pfam C2H2-type zinc finger 93 117 - -
Vifa3g00056 199 Pfam C2H2-type zinc finger 44 70 - -
Vifa3g00056 199 SMART c2h2final6 45 67 IPR013087 -
Vifa3g00056 199 SMART c2h2final6 93 115 IPR013087 -
Vifa3g00056 199 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vifa3g00056 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Vifa3g00056 199 Gene3D Classic Zinc Finger 42 115 - -
Vifa3g00056 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Vifa3g00056 199 PANTHER ZINC FINGER PROTEIN ZAT5 12 180 - -
Vifa3g00056 199 SUPERFAMILY beta-beta-alpha zinc fingers 43 115 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00056 Vifa-Chr3 4986625 4987224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00056 1 185 C2H2 Transcription Factor Family AT2G37430 38.660 1.31e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g00056 zf-C2H2_6 3.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00056 - - psat:127098085 306.605