Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00051 ATGATGGTATCGCGGGGGCTGTTCGGGTGGTCTCCACCTCATGTTCAACCTTTAACGCCGGTGTCTGAGGTTTCCGAGCCGCCCGAGTCGCCGTCTCCGTATATGGATATCGGTGGAGAGACTTCCGCGTCGCAGCAAATGGAGGCGGAGGAGGAGATGGAAGAGATGGAGGATATTGAGCCGCCGCCTGCTGCTGTTCCGTTCTCTGGACTTTTTGCTTGTGCTGATAAATTTGATTGGTTTCTTATGGTGGTTGGCTCTATCGCTGCGGCGGCTCACGGTACTGCGCTGGTTGTTTACTTGCATTACTTTGCTAAAGTTATTCAGGTTCCTCAGCAGGAGGATCAGTTTCATAGGTTCAAGGAGCTTGCTTTGACCATTGTTTATATTGCTGGTGCTGTTTTTGTTGCTGGTTGGATTGAGGTTTCATGCTGGATTCTTACTGGAGAACGACAGACAGCAGTCATCAGATCCAAATATGTCAGAGTATTACTTAACCAAGATATGAGTTTCTTTGATACTTATGGGAATAACGGAGACATTGTGAGTCAAGTACTGAGTGATGTCCTGCTCATTCAGTCTGCTCTCAGTGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTTCACAGGCTTGCAGAGAATATTCAAGATGCATACGCAGAAGCAGCCAGCATTGCTGAACAGGCAGTCTCCTATATACGGACCTTGTCTGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACGTCACTTCAAGCAACTCTAAGATATGGAATATTAATAAGTCTTGTCCAAGGGCTTGGACTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTAGTTATGCATGGAAAAGCTCATGGTGGGGAAATTATAACAGCTCTGTTTGCTGTAATTCTAAGTGGCTTGGGATTAAACCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTATACGAGATGATAAGCCGGTCATCCTCATCTTTTGATCATGATGGAAGTGCTCCCGTGGCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCACGCCCTGAAATCCCTATCTTAAGTGGGTTTTATCTCACAGTTCCTGCTAAGAAAACTGTGGCACTTGTTGGCAGAAATGGATCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGTTGAGGAGTCAAATAGGACTGGTCACTCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCATATGGGAGGGATACCACCGCAGATCAAATTGAAGAGGCTGCTAAAATAGCTCACGCACATACCTTTATCAGTTCATTAGATAAAGGTTATGATACACAGATTGGCAGGGCTGGTTTAACTTTGACGGAAGAACAGAAAATAAAGCTTTCTATTGCAAGAGCTGTGCTCCTAAATCCATCCATTCTCTTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTGGATCTCCTTATGCTGGGGCGCTCAACAATAATAATTGCTCGTAGGCTTAGTCTCATAAAGAATGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACTCACGATGAATTGTTGACCCTTGGTGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCCACAAAACTTCCAAAGAGAATGCCTGCTCGCAACTACAAGAAAACTGCAGCCTTCCAAATTGAGAAAGATTCTTCAGAGAGTCATAGCTACAAAGAACCATCATCCCCTAGAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTACTGTATTTCGGCCTCCAGATGGCTTCTTTAACTTACAAGAATCACCACATGTGCAGAGCCCACCACCTGAGAAGATGATGGAAAATGGTCAGTCTCTGGATTCAACAGAGAAAGAGCCATCAATTAAAAGGCAAGATAGCTTTGAAATGAGACTTCCCGAGTTACCCAAGATTGATGTTCACTCAGTGCATCGGCAAACATCAAATGGTTCTGACCCTGAATCCCCTGTTTCACCTCTTTTAACATCCGATCCTAAAAATGAGCGCTCCCATTCGCAAACATTTAGCAGACCAGATAGTTATTCTGATGAATTTTCAGTGAAAATGAACGAAACAAAGGATTCACGGCATCGGCATCAACCCTCATTTTGGAGACTGGCAGAGCTTAGTTTTGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGCGCAGCAATCTTTGGTGCATTCAATCCCCTTCTTGCTTATGTTATTGGCCTAGTGGTGACAACCTACTTTAGAATTGATGGAACTCATCACTTAAGGGGCGAGATTGACAAGTGGTGCTTGATCATTGCATGCATGGGTATTGTGACAGTTGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATAATGGGGGAGAAAATGACTGAAAGAGTCCGGAGAATGATGTTCTCAGCCATGCTACGTAATGAAATTGGATGGTATGATGAAGAGGAAAACAGTGCTGACAATTTATCCATGCGTTTGGCCAATGATGCAACTTTTGTGCGAGCTGCTTTCAGTAACCGGCTTTCCATATTTATACAGGACATTGCTGCAATTATTGTTGCTTTTCTCATTGGTGTTTTGCTGCACTGGAGAATAGCTCTTGTGGCTTTGGCAACACTTCCGATTCTCTGTGTTTCCGCTATTGCCCAGAAATTGTGGCTTGCTGGTTTTTCAAGGGGCATACAGGAAATGCACCGAAAAGCGTCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACGGTTGTTGCATTTTGTGCTGGTAATAAGGTAATGGAGCTCTACAGGCTGCAGTTAAATAAGATATTTAAGCAGAGCTTTCTCCATGGATTGGCTATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAACGCCCTTCTACTCTGGTACACAGCAATATGTATAAAAAAGAGTTATGTAGATGCACCTACTGCCCTCAAGGAGTACATTGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGGTTGGCTCCTTACATACTCAAGCGGCGTAAATCTCTCATTTCAGTGTTTGAAATTATAGACCGGGTGCCTAAAATTGACCCTGATGAAAGCTCAGCTTTGAAGCCACCCAATGTATATGGAAGCATTGAGTTGGAAAATGTTGACTTTTGTTATCCTACTCGGCCAGAAGTGCTGGTATTAAGCAATTTCAGTCTCAAAGTCAGCGGGGGGCAAACAATTGCTGTTGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATAATATCTTTGATGGAGAGATATTATGATCCAGTTGCTGGCCAAGTTTTATTGGATGGGAGGGATTTAAAATTATATAATCTGAAATGGCTTAGGAGCCACCTTGGTTTGGTTCAGCAGGAACCAGTTATCTTCTCAACAACCATACGGGAAAACATCATATACGCCAGGCATAATGCCAGTGAAGCTGAAATAAAAGAGGCCGCGAGAATAGCAAATGCTCATCATTTCATCAGTAATCTGCCACATGGTTATGACACTCATGTTGGAATGAGAGGTGTTGACTTAACTCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGTTGAAAAATGCACCTATTTTGTTGTTGGATGAAGCTAGCTCATCAATTGAATCAGAGTCAAGCCGAGTAGTGCAAGAGGCTCTAGACACTCTAATAATGGGAAACAAGACCACTATTTTAATAGCTCACAGGGCTGCCATGATGAGGCATGTGGACAATATAGTTGTACTTAATGGAGGACGGATAGTAGAAGAAGGGACTCATGATTCATTGGTGGCTAAGAATGGTCTGTATGTCCGATTAATGCAACCTCATTTTGGTAAGGGTTTGCGTCAGCATCGGCTTCTTTAG 4191 0.4238 MMVSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYMDIGGETSASQQMEAEEEMEEMEDIEPPPAAVPFSGLFACADKFDWFLMVVGSIAAAAHGTALVVYLHYFAKVIQVPQQEDQFHRFKELALTIVYIAGAVFVAGWIEVSCWILTGERQTAVIRSKYVRVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLSAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVMHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSSFDHDGSAPVAVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTADQIEEAAKIAHAHTFISSLDKGYDTQIGRAGLTLTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLGGLYAELLRCEEATKLPKRMPARNYKKTAAFQIEKDSSESHSYKEPSSPRMMKSPSLQRISTVFRPPDGFFNLQESPHVQSPPPEKMMENGQSLDSTEKEPSIKRQDSFEMRLPELPKIDVHSVHRQTSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSYSDEFSVKMNETKDSRHRHQPSFWRLAELSFAEWLYAVLGSIGAAIFGAFNPLLAYVIGLVVTTYFRIDGTHHLRGEIDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEIGWYDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDIAAIIVAFLIGVLLHWRIALVALATLPILCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNKIFKQSFLHGLAIGFAFGFSQFLLFACNALLLWYTAICIKKSYVDAPTALKEYIVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDESSALKPPNVYGSIELENVDFCYPTRPEVLVLSNFSLKVSGGQTIAVVGVSGSGKSTIISLMERYYDPVAGQVLLDGRDLKLYNLKWLRSHLGLVQQEPVIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISNLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKGLRQHRLL 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00051 1396 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 400 635 IPR003439 GO:0005524
Vifa3g00051 1396 PANTHER ABC TRANSPORTER B FAMILY 45 836 IPR039421 -
Vifa3g00051 1396 MobiDBLite consensus disorder prediction 18 45 - -
Vifa3g00051 1396 Gene3D ABC transporter type 1, transmembrane domain 765 988 IPR036640 GO:0005524|GO:0016020
Vifa3g00051 1396 Gene3D ABC transporter type 1, transmembrane domain 1001 1144 IPR036640 GO:0005524|GO:0016020
Vifa3g00051 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1137 1383 IPR027417 -
Vifa3g00051 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 634 IPR027417 -
Vifa3g00051 1396 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 375 - -
Vifa3g00051 1396 CDD ABC_6TM_Pgp_ABCB1_D2_like 819 1130 - -
Vifa3g00051 1396 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 824 1116 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00051 1396 FunFam ABC transporter B family member 20 390 637 - -
Vifa3g00051 1396 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1147 1384 IPR003439 GO:0005524
Vifa3g00051 1396 Pfam ABC transporter 1165 1313 IPR003439 GO:0005524
Vifa3g00051 1396 FunFam ABC transporter B family member 6 994 1144 - -
Vifa3g00051 1396 MobiDBLite consensus disorder prediction 669 686 - -
Vifa3g00051 1396 Pfam ABC transporter transmembrane region 85 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00051 1396 Pfam ABC transporter transmembrane region 828 1085 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00051 1396 FunFam ABC transporter B family member 20 70 403 - -
Vifa3g00051 1396 Gene3D - 390 637 IPR027417 -
Vifa3g00051 1396 Gene3D - 1145 1383 IPR027417 -
Vifa3g00051 1396 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 367 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa3g00051 1396 FunFam ABC transporter B family member 6 764 992 - -
Vifa3g00051 1396 Gene3D ABC transporter type 1, transmembrane domain 71 646 IPR036640 GO:0005524|GO:0016020
Vifa3g00051 1396 Coils Coil 246 266 - -
Vifa3g00051 1396 FunFam ABC transporter B family member 20 1137 1386 - -
Vifa3g00051 1396 MobiDBLite consensus disorder prediction 749 789 - -
Vifa3g00051 1396 SMART AAA_5 1174 1361 IPR003593 GO:0016887
Vifa3g00051 1396 SMART AAA_5 427 606 IPR003593 GO:0016887
Vifa3g00051 1396 SUPERFAMILY ABC transporter transmembrane region 811 1132 IPR036640 GO:0005524|GO:0016020
Vifa3g00051 1396 SUPERFAMILY ABC transporter transmembrane region 71 375 IPR036640 GO:0005524|GO:0016020
Vifa3g00051 1396 MobiDBLite consensus disorder prediction 655 729 - -
Vifa3g00051 1396 Pfam ABC transporter 421 565 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00051 Vifa-Chr3 4838435 4846264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00051 59 692 Calmodulin-binding Proteins AT2G36910 43.077 1.40e-161 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00051 K05658 - gmx:100799399 2510.72