Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00046 ATGGTTCTATCGAACAAGAAGCTTAAGCAGAAGCTTAGAGCTGAATTAACCCTAAACCAAACCAACCCCGAATCGAATCCCTCATCTTCATCTTCCAACTCTTTCAAACTTCTTCTACACTCTTCCACCAACAAACCCATTTTGTCTAAGAGAGAGAAACTTCGGAAAATTCGACCTTTGCAACAAACCCAAACCAATGAGGATGAAGCAGCAAAAAAGGAGAAGGAAATTGGGGTTGAGGGTTTGGGAAAGAAGAACAATAAGAAGAGGAAGATAAAGGCAGTGAAACAGAGTGATGATGATGATATGGGTGATGAAGTTGTTGTTAAGAAGGGGAAAGTGAAGGTAGAGAAAAAGAATGGTGATGTGGGTGATGAGGTTGTTGTTAAGAAGGGGAAAGTTAAGGTAGAGAATCAGAATGATGATGTGGGTGATGAGGTTGTTGTGAAGTTTATGAAACAATCGGTGAAAAAGGAGAAGCAGAAGAAGAAGAATTTGCTGAAGAAGAAGAGAAAGAAGGCTAAAGCTGCTGAGGAAAATGGGAAGGTTAAAACTGGTGACGAAAATGGTGAGGTCACAACTGCTGAGGGAAGTGGTTCTAATCATCAAGAGGAAATGTCGGAGCTTACTACCGAGTTGGCTAATACCAATATCACTACCAGTCAAGAAAACGGTGATGCTGCTACAAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGATATTCATAGTTATTTTGAAAGCTGTGGCACCATTACTGAAATTAATTGTATGACTTTTCCTGACACTGGCAAGTTCCGAGGGATTGCAATAATTGTTTTTAAGACTGAAGCAGCGGCCAAACGAGCATTGGCTCTTGATGGATCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCAAACAACCCGATTTACTCCAGAACTGAAGGAGGGATATAATAGAATATATGTTGGAAGTTTATCATGGGAAATAACAGAAGAAGAACTGAGGAAATTCTTCTCAAATTGCAATATAAAGTCCATACGATTGGGAAAGGACAAGGAAACAGGAGAATTCCGAGGGTATGCTCATGTGGATTTCAGTGATAGTAAGTCACTCAAGACAGCACTTGCATTGGATCAAAGTGTTTTGTTTGGAAGGCCTGTCCGGATAAGTTGTGCTGTTCCTTTGAATAAAAAACTGGGTGCGGGTGAAAAACCAGTCGCAGGCTCGAAACCAAGTGCAGTTGAAAAATCAGTTGCAGGTTTTAAAGCAAGTGCAGTTGAAAAATCAGTTGCAGGTTTTAAACCAAGTGCAGTTGAAAAATTAGTTGCAGGTTCTAAATCAGGTTTGGGTGAAAAATCATTTGCAGTTTCTAAACCAGGTGCAGGTGAAAAGTCATTTGCAGCTTCTAAACCAGGTGCGGGCGAAAAATCATATGCAGGCTCTAAACCAAGTGCAGGAGAAAAGTCAGTTGCTGGCGACAAATTTGTTGCAGTTGAGGAACCAACTGTTGAGAAACCAATTACTGTCGTTGCAAGTGGCAAGAAGAAGAATAGGATGTGCTACGGGTGTCGTCAAAAAGGACATAATCTCTCAGAATGTCCAAATCCACAAATTGTCACTTCTACTACAATCTAA 1644 0.4045 MVLSNKKLKQKLRAELTLNQTNPESNPSSSSSNSFKLLLHSSTNKPILSKREKLRKIRPLQQTQTNEDEAAKKEKEIGVEGLGKKNNKKRKIKAVKQSDDDDMGDEVVVKKGKVKVEKKNGDVGDEVVVKKGKVKVENQNDDVGDEVVVKFMKQSVKKEKQKKKNLLKKKRKKAKAAEENGKVKTGDENGEVTTAEGSGSNHQEEMSELTTELANTNITTSQENGDAATKVYVGGIPYYSSEDDIHSYFESCGTITEINCMTFPDTGKFRGIAIIVFKTEAAAKRALALDGSDMGGLFLKIQPYKATQTTRFTPELKEGYNRIYVGSLSWEITEEELRKFFSNCNIKSIRLGKDKETGEFRGYAHVDFSDSKSLKTALALDQSVLFGRPVRISCAVPLNKKLGAGEKPVAGSKPSAVEKSVAGFKASAVEKSVAGFKPSAVEKLVAGSKSGLGEKSFAVSKPGAGEKSFAASKPGAGEKSYAGSKPSAGEKSVAGDKFVAVEEPTVEKPITVVASGKKKNRMCYGCRQKGHNLSECPNPQIVTSTTI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00046 547 Gene3D - 152 311 IPR012677 -
Vifa3g00046 547 SMART rrm1_1 322 393 IPR000504 GO:0003723
Vifa3g00046 547 SMART rrm1_1 230 302 IPR000504 GO:0003723
Vifa3g00046 547 CDD RRM1_PHIP1 231 302 IPR034361 -
Vifa3g00046 547 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 71 305 - -
Vifa3g00046 547 SUPERFAMILY RNA-binding domain, RBD 218 307 IPR035979 GO:0003676
Vifa3g00046 547 MobiDBLite consensus disorder prediction 14 45 - -
Vifa3g00046 547 Coils Coil 149 180 - -
Vifa3g00046 547 SUPERFAMILY RNA-binding domain, RBD 314 402 IPR035979 GO:0003676
Vifa3g00046 547 MobiDBLite consensus disorder prediction 172 186 - -
Vifa3g00046 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 390 IPR000504 GO:0003723
Vifa3g00046 547 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 297 IPR000504 GO:0003723
Vifa3g00046 547 ProSiteProfiles Zinc finger CCHC-type profile. 523 538 IPR001878 GO:0003676|GO:0008270
Vifa3g00046 547 MobiDBLite consensus disorder prediction 456 493 - -
Vifa3g00046 547 MobiDBLite consensus disorder prediction 160 204 - -
Vifa3g00046 547 MobiDBLite consensus disorder prediction 67 85 - -
Vifa3g00046 547 Gene3D - 312 402 IPR012677 -
Vifa3g00046 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 306 IPR000504 GO:0003723
Vifa3g00046 547 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 397 IPR000504 GO:0003723
Vifa3g00046 547 MobiDBLite consensus disorder prediction 1 104 - -
Vifa3g00046 547 SUPERFAMILY Retrovirus zinc finger-like domains 516 539 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00046 Vifa-Chr3 4685039 4687743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00046 323 393 Eukaryotic Initiation Factors Gene Family AT2G23350 31.507 6.36e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00046 - - mtr:25485710 585.489