Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00029 ATGGCCAGAATCAAGGTTCATGAGTTGAGGCAGAAAGCCAAAGCTGATCTGTTGAGTCAGCTCAAAGACCTCAAGGCTGAGCTCGCTTTGCTCCGTGTTGCTAAGGTCACTGGTGGTGCACCCAACAAGCTCTCCAAGATCAAGGTTGTTAGGCTGTCGATTGCTCAGGTTTTGACAGTGATATCTCAGAAGCAGAAGGCTGCATTGAGGGAAGTTTACAAGAATAAGAAGTACTTGCCTCTTGATCTGCGCCCTAAGAAGACCAGGGCTATCCGCCGAAGGCTCACCAAGCACCAGGCATCTTTGAAGACCGAGCGGGAGAAGAAAAAGGAGACATACTTCCCATTGAGGAAGTATGCCATCAAAGCTTAA 372 0.4866 MARIKVHELRQKAKADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPLRKYAIKA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00029 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Vifa3g00029 123 FunFam 60S ribosomal protein L35 1 77 - -
Vifa3g00029 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Vifa3g00029 123 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vifa3g00029 123 Gene3D - 78 123 - -
Vifa3g00029 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vifa3g00029 123 Coils Coil 14 34 - -
Vifa3g00029 123 CDD Ribosomal_L29_HIP 8 64 - -
Vifa3g00029 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Vifa3g00029 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Vifa3g00029 123 FunFam 60S ribosomal protein L35 78 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00029 Vifa-Chr3 3674017 3675232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00029 1 122 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 90.164 9.44e-74 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00029 K02918 - rvl:131318772 224.557