Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00028 ATGCATCCGGGTGACGATTCATCATTGTTCTTTGATGGAACAAGGCAGAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACATCAGAAACTGGGAAATCTATGCGATTTGTGCTAGTGTTGAAGCCCAGATATACTCCCAATGCAACATATATGAGGCAGGAGCTAAGAAAAAGGCTTTTGAATTTTATACCGAAAAGGCGGAAGACAGAGAACATCAGGAGTCTGGCTTCATAATATCTGAAGGAGACATGCTTCTGAATGGTGCTCAGCCATGCATGCCACCGGAATCTAAAGAAGAATCCATGTTTCATCCTAGTGAATATTACCCAACTTGGACAATGGAAGCAGCTACAGATTCTCTCAGAGAGGTTCTCCAGTTATGTGCAGGTTGGCAGTCCATTTGTAGGCCAGTAGACAATATGTTATGA 444 0.4257 MHPGDDSSLFFDGTRQRHPRVRFGKVHLYNNYIRNWEIYAICASVEAQIYSQCNIYEAGAKKKAFEFYTEKAEDREHQESGFIISEGDMLLNGAQPCMPPESKEESMFHPSEYYPTWTMEAATDSLREVLQLCAGWQSICRPVDNML 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00028 147 PANTHER PECTATE LYASE 18-RELATED 10 102 IPR045032 GO:0030570
Vifa3g00028 147 Pfam Pectate lyase 11 55 IPR002022 -
Vifa3g00028 147 SUPERFAMILY Pectin lyase-like 10 144 IPR011050 -
Vifa3g00028 147 Gene3D - 8 137 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00028 Vifa-Chr3 3669763 3671076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00028 10 145 Polysaccharide Lyase AT3G55140 63.971 8.13e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00028 K01728 - gmx:100802068 246.514