Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00018 ATGTCTTCTCGCATTGTAGCTGAAGATGTTCCTGAGTCATATTTCGACTTTATGGAAATGGATAACCTCACTCACCGCCGTTCCGGTGACATGCCAACTCTCGGACAGCTTCTTAAACATGTTGGTGATGTGAGGAAGGAAGCTACTGGAGACGGTAGTGAGACGCCTGTTCATCATATTGTTGACGTTGGAACAGAGTCCAGATCACTACTTCCATTCGTTCTGTCCTTTAACAATCTTACCTACAGTGTCAAGGTCCGGCATAAGATGAGTTACAGCGACGTATTTTCATGCTGTCGTCGTGAGTCTCCGGTGGGTGAAGCATCGGGGGAGTCGGTGTTTACAAGGACTAAGACTCTGTTGAATGATATTACAGGTGAAGCGCGAGACGGTGAGATCATGGCGTTTCTCGGAGCTAGTGGCTCGGGGAAATCAACTCTGATAGACGCGCTGGCTAACAGAATTGCGAAAGGGAAGCTGAAAGGTTCGGTGAAACTGAATGGTGAATCAGTGGAGTCTCGTTTACTTAAGGTGATTTCAGCTTACGTGATGCAAGATGATCTTCTCTTTCCGATGCTTACTGTGGAAGAAACTCTCACCTTTGCGGCCGAGTTTAGATTACCTCGATCACTCTCAAAATCGAAGAAAAATGCGCGTGTTCAAGCTTTAATCGATCAACTAGGACTCCGCAATGCTGCAAAAACGGTCATAGGAGACGAAGGTCACCGTGGTGTCTCAGGCGGAGAACGACGCAGAGTTTCAATTGGAATCGACATCATCCATGATCCAATAGTACTATTCCTTGACGAGCCAACTTCAGGACTAGACTCCACAAGTGCTTTCATGGTTGTGAAAGTTCTTCAAAGAATCGCGCAGAGTGGAAGCATAGTCATCATGTCAATTCATCAACCAAGTTACAGAATCTTAGGTCTTCTGGATCGCATGATCTTCTTATCGCGTGGACAAACCGTTTACAGCGGCTCACCTTCGCAGTTGCCTTCATACTTTGCAGAATTCGGTCATCCTATACCAGAAGGTGATAACCGTACCGAGTTTGCATTAGACCTAATTCGCGAACTTGAAGGTTCACCCGGAGGAACAAAAAGTTTAGTTGAATTCAACAAATCGTGGCAAAGTATGACAAAGCTTCATCGTGTTGAAGATTTACCACAAAACTCAACCTCTTCTTTGTCATTGAAGGAAGCTATCAGCGCAAGTATTTCAAAAGGTAAGTTAGTTTCTGGAGCAACCGCAACAAATAACTCCAACACAAGATCATCTTCATCAGCAGCGTCTATGGTGCCTACTTACGCAAATCCGTTTTGGATTGAGTTATTAACCCTTTCAAAGCGGTCCATAACCAATTCAAGAAGAATGCCTGAACTATTCGGAATAAGATTAGGTGCTGTTATGGTGACAGGGTTCATTCTTGCAACAATGTTCTGGCAACTAGACAACACTCCTAAAGGTGTTCAAGAAAGACTTGGATTCTTTGCTTTTGCTATGTCAACTACTTTTTACACCACCGCAGATGCATTACCGGTTTTTATCCAAGAAAGGTACATTTTCATGAGAGAAACTTCTCACAACGCTTATAGAAGATGGTCTTATGTCATTTCACATGCTCTCGTTGCTTTACCTGCGTTATTGTTTCTTTCGCTCGGGTTTGCTGCTCTAACGTTTTGGGCTGTTGGCCTAGACGGTGGATTCTCCGGCTTTTTGTTTTATTTTGTTATCATCTTTGCTTCGTTTTGGGCCGGGAATTCCTTCGTGTCGTTTCTTTCTGGTGTAGTGCCTCATGTTATGTTAGGTTACACTATCGTGGTTGCCATTCTCGCTTACTTCTTGTTGTTTAGCGGGTTCTTTATTAATCGGGATAGGATTCCGAGTTACTGGATATGGTTCCATTACATGTCATTGGTTAAATATCCTTATGAAGCTGTTTTGCAGAACGAATTTAGTGATGCAGTTAAGTGTTTTGTGAGAGGGGTTCAGATTTTCGATAATACACCTCTTGCTTCTGTTCCTGATGCACTTAAGTTGAAGCTGTTGGATAATATGAGTGAAACTTTGGGAATGAATATAACAGCTTCTACTTGTTTAACAACTGGTACTGATTTGTTGAAGCAAAATGGAGTTTTGGATTTGAGTAAATGGAACTGTCTGTGGATAACTGTGGCTTGGGGTTTCTTCTTTAGGATTTTGTTCTATGTGGTTTTGTTGCTTGGTAGCAAAAACAAGAGGAGTTGA 2250 0.428 MSSRIVAEDVPESYFDFMEMDNLTHRRSGDMPTLGQLLKHVGDVRKEATGDGSETPVHHIVDVGTESRSLLPFVLSFNNLTYSVKVRHKMSYSDVFSCCRRESPVGEASGESVFTRTKTLLNDITGEARDGEIMAFLGASGSGKSTLIDALANRIAKGKLKGSVKLNGESVESRLLKVISAYVMQDDLLFPMLTVEETLTFAAEFRLPRSLSKSKKNARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRMIFLSRGQTVYSGSPSQLPSYFAEFGHPIPEGDNRTEFALDLIRELEGSPGGTKSLVEFNKSWQSMTKLHRVEDLPQNSTSSLSLKEAISASISKGKLVSGATATNNSNTRSSSSAASMVPTYANPFWIELLTLSKRSITNSRRMPELFGIRLGAVMVTGFILATMFWQLDNTPKGVQERLGFFAFAMSTTFYTTADALPVFIQERYIFMRETSHNAYRRWSYVISHALVALPALLFLSLGFAALTFWAVGLDGGFSGFLFYFVIIFASFWAGNSFVSFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPSYWIWFHYMSLVKYPYEAVLQNEFSDAVKCFVRGVQIFDNTPLASVPDALKLKLLDNMSETLGMNITASTCLTTGTDLLKQNGVLDLSKWNCLWITVAWGFFFRILFYVVLLLGSKNKRS 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00018 749 Pfam ABC transporter 121 273 IPR003439 GO:0005524
Vifa3g00018 749 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 90 345 IPR003439 GO:0005524
Vifa3g00018 749 SMART AAA_5 130 322 IPR003593 GO:0016887
Vifa3g00018 749 Pfam ABC-2 type transporter 445 653 IPR013525 GO:0016020|GO:0140359
Vifa3g00018 749 Gene3D - 108 338 IPR027417 -
Vifa3g00018 749 Pfam ABC-2 type transporter 302 395 IPR043926 GO:0140359
Vifa3g00018 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 337 IPR027417 -
Vifa3g00018 749 FunFam ABC transporter G family member 6 110 336 - -
Vifa3g00018 749 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 59 736 - -
Vifa3g00018 749 ProSitePatterns ABC transporters family signature. 245 259 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00018 Vifa-Chr3 1126331 1128580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00018 120 332 Calmodulin-binding Proteins AT2G36910 28.182 1.35e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00018 K05681 - gmx:100803658 1176.77