Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00003 ATGGCTTCAACATCTTGTGTTATGAAAAGTCCATTAGCTATGAAAGAGACTGGTTCAAGCTGTGGTCAATATCCTCCTCCTATGGCAACGTATGAAGAGGTTGTAGACAATCCTAAGCTCTTTTTGCATAGCTTGGAGAAGCTCCATGCTACAATGGGCACCAAGTTCATGGTTCCCATTATTGGGGGAAAGGAGTTGGATTTACACCGCCTCTTTGTTGAAGTGACTTCTCGTGGAGGGATTGAGAAAATCATTAAGGATAGAAAATGGAAAGATATAACTTTAGTTTTCAATTTTCCATCAACGGCTACAAATGCTTCTTTTGTGCTGAGGAAGTACTATACTTCATTACTCTACCATTATGAGCAAATCTATTACTTTAAAGCTCATAACTGGACCCATGCAGCTTCTGATGTTTTGCAGAGTCCATCATCCACCCCAGTTCCTGCTCTGAAGATGCCGTTTTCACATACTTCGTCTGAAGTTCAACCAGCTGTCGTTCAACCGTTAAATGTTAATGCCGCTAGACTGCCTGAAGCAATGGCATCATCTTCAGCAGGGTCTCATGTTGTCGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTCGTTACTGTCACAATCGGTTCAGAGAAACTCAAGGGAGTACTTTATCAAGCTCCAGAAAATGCTGCTGTGTTGCCAGCACCGCCAGCTCCCAACCACAGTGGTTCGGCTAATAACAACAATGCTGGTGTCCATCGCCGCCGGCGTAGAAAGAAATCTGAAATGAAAAGGAGAGATCCTGCTCACCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCAGAACAACATGCTAGGCTAAAACCTCTCAACCAAGGGAAGGACCGAGAGATCAGTAGGACCATCGGTGAACTCTGGAACAAGTTAAACGAATCTGAAAAAGCGGTTTATCAAGAACAAGCCATGAAGGACAAAGAGAGGTACAAAACAGAAATGGAGTCTTACCGCGAGAAGTTGAAGACGGATCAAGTCATTAGTGATGCGGAGCCACTTCAACAGCGACTTCCTGAAGCCGATACTGATATGTTGAATGCTGATATGAAATTTGATGAAGCTGAGGCAGATTCTCTTCAAACACCAGAGGAGAGCAGTTCGGCCGGAAGCGAGTATGAAGATGATAGAGGCATGGAGAAAGATTTTAGTGTGGATGCATTTCCTGTTATAGGAGTTGGAGCTGAGGCTATGGATTCAGTAGAGAAATCATCCAAGGGGGGTTTATGA 1269 0.4374 MASTSCVMKSPLAMKETGSSCGQYPPPMATYEEVVDNPKLFLHSLEKLHATMGTKFMVPIIGGKELDLHRLFVEVTSRGGIEKIIKDRKWKDITLVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFKAHNWTHAASDVLQSPSSTPVPALKMPFSHTSSEVQPAVVQPLNVNAARLPEAMASSSAGSHVVGVIDGKFESGYLVTVTIGSEKLKGVLYQAPENAAVLPAPPAPNHSGSANNNNAGVHRRRRRKKSEMKRRDPAHPKPNRSGYNFFFAEQHARLKPLNQGKDREISRTIGELWNKLNESEKAVYQEQAMKDKERYKTEMESYREKLKTDQVISDAEPLQQRLPEADTDMLNADMKFDEAEADSLQTPEESSSAGSEYEDDRGMEKDFSVDAFPVIGVGAEAMDSVEKSSKGGL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00003 422 CDD HMG-box_AtHMGB9-like 265 331 - -
Vifa3g00003 422 Coils Coil 314 334 - -
Vifa3g00003 422 MobiDBLite consensus disorder prediction 363 394 - -
Vifa3g00003 422 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Vifa3g00003 422 Gene3D High mobility group box domain 249 349 IPR036910 -
Vifa3g00003 422 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Vifa3g00003 422 MobiDBLite consensus disorder prediction 245 259 - -
Vifa3g00003 422 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Vifa3g00003 422 Gene3D - 29 138 IPR036431 GO:0003677
Vifa3g00003 422 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Vifa3g00003 422 SUPERFAMILY ARID-like 33 132 IPR036431 GO:0003677
Vifa3g00003 422 SUPERFAMILY HMG-box 253 336 IPR036910 -
Vifa3g00003 422 FunFam High mobility group B protein 15 247 342 - -
Vifa3g00003 422 MobiDBLite consensus disorder prediction 229 273 - -
Vifa3g00003 422 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Vifa3g00003 422 SMART hmgende2 264 333 IPR009071 -
Vifa3g00003 422 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 378 - -
Vifa3g00003 422 FunFam High mobility group B protein 15 29 142 - -
Vifa3g00003 422 SMART ARID_2 32 122 - -
Vifa3g00003 422 SMART bright_3 36 127 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00003 Vifa-Chr3 385859 388308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00003 1 395 ARID Transcription Factor Family AT1G04880 57.353 1.31e-133 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa3g00003 ARID 7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00003 - - gmx:100783284 569.696