Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05791 ATGAAGCCGATTCAGCTTCCACCTCCAACCGCCACCGGCTCAGCTGCAGGTTCTCCTAACCGTCCTCAGCGCCGTCGCAGAGACCTTACGCTTCCGCTTCCACAGCGAGACACAAACTTAGCCGTTCCGCTTCCGCTTCCTCCTTCTGGTAGCGGTAGCGGTGGAAGCGGAAATGGAGGAAACGGAAGTGGAGGAGGGAACGGAGGAGGAACGAATCAGAATCAGCAACTAGTGATTCCGTTCTCCGAGCTTGAGAGGCTGAACCGGATCGGAAGCGGAAGCGGAGGAACGGTTTATAAAGTAGTTCACAGAATCAACGGCCGTGCGTACGCGTTGAAGGTGATTTACGGTCATCACGAGGAGTCTGTCCGTCGTCAGATCCATAGAGAAATCCAGATCTTGAGAGATGTTGATGATCCGAACGTGGTGAAGTGTCACGAGATGTACGATCACAACGCTGAAATTCAGGTTCTGTTGGAGTATATGGACGGTGGTTCTCTGGAAGGGAAACACATCCCTCAGGAGAATCAGCTTGCTGACGTGGCGCGTCAGATCCTCCGTGGACTCGCTTATCTCCACCGTCGTCATATCGTTCATCGAGACATCAAACCGTCGAATCTGTTGATCAATTCGCGGAAACAGGTGAAGATCGCTGACTTCGGTGTTGGCAGGATTCTGAATCAAACGATGGATCCGTGTAATTCATCGGTAGGAACGATTGCTTACATGTCGCCGGAGAGGATAAACACTGATATCAATGACGGACAATACGATGCTTACGCCGGCGATATATGGAGTTTAGGTGTGAGTATATTGGAGTTTTATATGGGGAGATTTCCGTTTGCGGTTGGTAGACAAGGTGATTGGGCTAGTTTGATGTGTGCTATTTGTATGTCGCAACCACCGGAAGCTCCGACGAGTGCTTCGCCGGAGTTTAGGGATTTCGTTTCGCGGTGTTTGCAAAGAGATCCGTCGAGGAGATGGCCGGCTTCGAGGCTGCTTTCGCATCCTTTTCTTGCTCGAAACGTTTCTCATCAGAATCAGAGTCCTCCAAATCTTCATCAACTACTTCCTCCACCAAGGCCACTTTCTTCTTAG 1098 0.5073 MKPIQLPPPTATGSAAGSPNRPQRRRRDLTLPLPQRDTNLAVPLPLPPSGSGSGGSGNGGNGSGGGNGGGTNQNQQLVIPFSELERLNRIGSGSGGTVYKVVHRINGRAYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDHNAEIQVLLEYMDGGSLEGKHIPQENQLADVARQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPTSASPEFRDFVSRCLQRDPSRRWPASRLLSHPFLARNVSHQNQSPPNLHQLLPPPRPLSS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05791 365 CDD PKc_MAPKK_plant_like 82 339 - -
Vifa2g05791 365 MobiDBLite consensus disorder prediction 51 74 - -
Vifa2g05791 365 SMART serkin_6 84 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05791 365 Gene3D Transferase(Phosphotransferase) domain 1 165 353 - -
Vifa2g05791 365 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Vifa2g05791 365 MobiDBLite consensus disorder prediction 1 74 - -
Vifa2g05791 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vifa2g05791 365 FunFam Mitogen-activated protein kinase 2 164 351 - -
Vifa2g05791 365 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 55 343 - -
Vifa2g05791 365 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Vifa2g05791 365 MobiDBLite consensus disorder prediction 344 365 - -
Vifa2g05791 365 Pfam Protein kinase domain 85 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05791 365 SUPERFAMILY Protein kinase-like (PK-like) 81 358 IPR011009 -
Vifa2g05791 365 ProSiteProfiles Protein kinase domain profile. 84 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05791 Vifa-Chr2 1706875227 1706876324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05791 1 355 MAP Kinase Kinase Gene Family AT1G51660 70.986 4.25e-172 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vifa2g05791 Pkinase 7.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05791 K13413 - gmx:100818488 603.594