Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05790 ATGACAATCCAAAAAACAGAAGAAATCATTTTTAGGTCTAAGCTTCCAGATATCCACATTCCCAAAAACCTTCCTCTTCATTCATATTGCTTTGAAAATCTACCAAAATATGGATCACATCCATGTCTCATCAATGCACCAACAGGCGAAATCTACACGTACCACGACGTCGAGCTATCCGCTCGACGAGTCGCGTCCGGTCTCAAAAAACTCGAGATCGGACAAGGCGATGTCATCATGGTTCTTCTCCCAAATTGTCCCGAATTCGTGTTTTCCTTCCTAGGCGCTTCCATTCGCGGCGCTATAATGACCGCCGCGAATCCTTTCTTTATGGCTGCTGAGATTGCTAAACAAGCAAAAGCTTCTAATACTAAGTTGATAGTAACACAAGGTTGTTACTATGAGAAAGTTAAGGATTTGGAAAATGTGAAGCTTGTTTTTGTGGATTCTTTACCAGAAGGAGAAAATCATATGCATTTCAGTGAATTGGTTCAGGCTCATGAGAATGAAATTGATGAGAAATTTCAACAGGTAGAAGTGAACATCAACCCTGATGATGTGGTTGCTTTGCCATATTCTTCTGGAACAACAGGGTTACCTAAAGGTGTTATGCTAACACACAAAGGATTAGTGACAAGCATAGCACAACAAGTTGATGGTGAAAATCCAAATCTATATTACCACAGTGAAGATGTGATACTCTGTGTTCTTCCCATGTTTCATATCTACTCACTCAACTCTGTTTTGCTTTGTGGTTTGAGAGCCAAAGCTTCCATTCTCTTAATGCCAAAGTTTGATATTCATGCATTTTTGGAACTTGTTCATAAATACAAAGTCACCATTGCTCCTGTTGTGCCACCAATTGTTTTGGCTATTTCTAAGTCACCTGAACTTGATAGCTATGACCTTTCATCCATTAGGGTTTTGAAATCTGGTGGGGCACCTCTTGGTAAAGAACTTGAGGACACTGTCAGGGCCAAATTTCCTAAAGCCAAACTTGGACAGGGATATGGAATGACTGAGGCTGGACCTGTGCTAACAATGTGTTTATCATTTGCAAAAGAGGCAATTGATGTTAAACCAGGTGCATGTGGAACCGTTGTTAGAAATGCTGAGATGAAGATTGTCAATCTAGAAAACGATTCTTCCTTGCCTCGTAATCAACCCGGTGAAATTTGCATCAGAGGTGACCAAATCATGAAAGGTTATCTAAACGATCCAGAAGCAACATTGAGAACAATTGACAAAGAAGGTTTTCAAGTTGCTCCAGCTGAACTTGAAGCTATTATTCTCTCTCATCCTCAAATCTCTGATGTTGCTGTCGTCCCAATGCAAGATGAAGCCGCTGGTGAGGTTCCAGTTGCATATGTGGTTAGATCGAACGGTGATATCGACACAACTGAGGATGAACTTAAAAAATTCGTTGCTAAACAGGTGGTGTTTTACAAAAGAATAAATCGAGTATTCTTCATTGATGCTATTCCCAAGTCACCTTCTGGCAAAATATTACGAAAGGATTTAAGGGCTAGGCTTGCAGCAGGGTTTGCAAATTGA 1554 0.4048 MTIQKTEEIIFRSKLPDIHIPKNLPLHSYCFENLPKYGSHPCLINAPTGEIYTYHDVELSARRVASGLKKLEIGQGDVIMVLLPNCPEFVFSFLGASIRGAIMTAANPFFMAAEIAKQAKASNTKLIVTQGCYYEKVKDLENVKLVFVDSLPEGENHMHFSELVQAHENEIDEKFQQVEVNINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHSEDVILCVLPMFHIYSLNSVLLCGLRAKASILLMPKFDIHAFLELVHKYKVTIAPVVPPIVLAISKSPELDSYDLSSIRVLKSGGAPLGKELEDTVRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKEAIDVKPGACGTVVRNAEMKIVNLENDSSLPRNQPGEICIRGDQIMKGYLNDPEATLRTIDKEGFQVAPAELEAIILSHPQISDVAVVPMQDEAAGEVPVAYVVRSNGDIDTTEDELKKFVAKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRARLAAGFAN 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05790 517 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Vifa2g05790 517 Pfam AMP-binding enzyme 35 416 IPR000873 -
Vifa2g05790 517 Gene3D - 3 417 IPR042099 -
Vifa2g05790 517 Pfam AMP-binding enzyme C-terminal domain 425 501 IPR025110 -
Vifa2g05790 517 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 419 - -
Vifa2g05790 517 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 421 - -
Vifa2g05790 517 Gene3D - 418 513 IPR045851 -
Vifa2g05790 517 FunFam 4-coumarate--CoA ligase 2 413 514 - -
Vifa2g05790 517 SUPERFAMILY Acetyl-CoA synthetase-like 10 513 - -
Vifa2g05790 517 CDD 4CL 20 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05790 Vifa-Chr2 1706414996 1706418480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05790 8 479 Monolignol Biosynthesis Gene Families AT1G51680 63.583 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05790 K01904 - gmx:547944 781.556