Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05788 ATGAAGGATAAAGATAAAGACAAGGACAAGGAAAAGGAAACCGAGAAGAAAAAGTATCCTATCGGCGCCGAACATTACGTTCTCCACGAAGAGATTGGACAAGGCGTCAGTGCTTCCGTTCATCGTGCTATCTGTGTTCCTTTCAACGAGATCGTCGCCATCAAGATTCTCGACTTCGAACGTGACAACTGCGATCTGAATAATATATCTCGTGAAGCGCAAACGATGGTATTAGTGGACCATCCTAACGTATTGAAATCACACTGTTCATTCGTGAGCGATCACAATCTATGGGTTGTGATGCCGTTTATGGCGGGTGGTTCATGTCTTCATATATTGAAAGCTGCACATCCTGAGGGATTTGAAGAGGTTGTTATTGCGACCGTGCTTAGAGAGGTGTTGAAGGGTTTAGAGTATCTTCATCATCACGGTCATATTCATCGGGATGTTAAGGCTGGTAACGTGTTGATTGATTCTCGCGGTGCAGTTAAGCTAGGTGATTTCGGTGTTTCGGCTTGTCTTTTTGATTCTGGTGATCGGCAACGGTCGAGGAATACTTTTGTTGGAACTCCTTGTTGGATGGCACCTGAGGTTATGGAGCAATTGCATGGCTATAACTTCAAAGCTGACATTTGGTCATTTGGCATAACCGCATTGGAGCTTGCCCACGGCCATGCTCCTTTTTCAAAATATCCACCTTTGAAGGTATTGCTTATGACTTTGCAAAATGCACCCCCTGGCCTTGACTACGAAAGTGATAGGAAATTCTCTAAGTCGTTTAAGCAGATGATTGCTTGTTGTTTGGTTAAAGATCCTTCCAAACGACCATCTGCTAACAGGTTGTTAAAGCATTCCTTCTTTAAGCAAGCACGTTCAAATGATTATATTTCACGCACACTTTTGGAGGGGTTGCCTGCTTTGGGTGATCGCATGGAGATCCTAAAGAGAAAAGAAGAAGACATGCTTGCACAAAAGAAAATGCCTGATGGGAAGATGGAGGAATTATCACAGAGTGAATACAAACGAGGCATTAGCGGTTGGAACTTTAATCTTGAAGATATGAAGGCCCAGGCTTCCTTGATCAACGATTTTGACGATGCTATATCAGATATCTCTCATGCATGTAGTTCATCTTCATTATCAACTCTTGATGGACAAGATAGGCTACAGCAAACTCGTCAAACTGTTGACTTGGAGGAAATTAATGAAATGCGTAATCAATCAGCTTCTGTTCCGGTAGTTGATTCCACAGTAAATGATGCCAAGACTAAGATTGAAAAATGTGACGATGACTCTAGTATCACCAGTTCAAGCCACGAACCACAAACTTCTTCCGGCCCAGACGATCACGTGGACCATAGTTTAGGTGAAAAATGTAATGTAGAAAACGGTGGAACCGTGGCTGTCCATTCACATCATAGAAGAGGTTCAACAAGCATATTACCAGAGGTTACTCTTCCACCTATTCGAGCAGAATGTGACAAGCTACCAATTCTGCCTGTCTCAAATGCCAGTGCAACTTCAGTTCCTCAGAATGGAGAAGATGTGCTGACTGAACTTCCTTCTAAAGTCTCAAAATCATCAGCTAATTCTGATGACACTGATGATAAAACAAAGGTACCGGTTGTTCAACAGAGAGGACGTTTTAAGGTTACATCTGAGAACGTTGACCCGGAAAAGGTGACCCCTTCACCTGTACTGCAAAAGAGTCACAGCATGCAGGTTGGTTGTTTAGAGTTCATAGGCCAGCATAATGCTGCTCCTTTACATTCAGCTTTACCGTTATTATCAACAATATCTGATGCTACTACATCATCAAATATTTCTGTCTGTTCTCTGTTCCCAGTGTTGCACTCTGTGCTCCAGACAAATATTCTTCAGAGGGAAACCATTCTAACTTTAATGAGACAAATTACTGCTGGTGAATCTCCTGCTGATAGCACAACTAGCCCTGCACATATAGCAACAGTGGAGAAATCCTTGCTTGAATCATCTCACGATAGGGAAAAGGAATTACTTCATGAGATAACTGAATTGCAGTGGAGGATCATATGCGCCCAGGAAGAGCTTCAAAAATTGAAAACAGATAATGCTCAGGTATGA 2103 0.4246 MKDKDKDKDKEKETEKKKYPIGAEHYVLHEEIGQGVSASVHRAICVPFNEIVAIKILDFERDNCDLNNISREAQTMVLVDHPNVLKSHCSFVSDHNLWVVMPFMAGGSCLHILKAAHPEGFEEVVIATVLREVLKGLEYLHHHGHIHRDVKAGNVLIDSRGAVKLGDFGVSACLFDSGDRQRSRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKYPPLKVLLMTLQNAPPGLDYESDRKFSKSFKQMIACCLVKDPSKRPSANRLLKHSFFKQARSNDYISRTLLEGLPALGDRMEILKRKEEDMLAQKKMPDGKMEELSQSEYKRGISGWNFNLEDMKAQASLINDFDDAISDISHACSSSSLSTLDGQDRLQQTRQTVDLEEINEMRNQSASVPVVDSTVNDAKTKIEKCDDDSSITSSSHEPQTSSGPDDHVDHSLGEKCNVENGGTVAVHSHHRRGSTSILPEVTLPPIRAECDKLPILPVSNASATSVPQNGEDVLTELPSKVSKSSANSDDTDDKTKVPVVQQRGRFKVTSENVDPEKVTPSPVLQKSHSMQVGCLEFIGQHNAAPLHSALPLLSTISDATTSSNISVCSLFPVLHSVLQTNILQRETILTLMRQITAGESPADSTTSPAHIATVEKSLLESSHDREKELLHEITELQWRIICAQEELQKLKTDNAQV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05788 700 MobiDBLite consensus disorder prediction 424 458 - -
Vifa2g05788 700 MobiDBLite consensus disorder prediction 520 539 - -
Vifa2g05788 700 Gene3D Phosphorylase Kinase; domain 1 14 103 - -
Vifa2g05788 700 FunFam serine/threonine-protein kinase BLUS1 isoform X1 107 340 - -
Vifa2g05788 700 CDD STKc_OSR1_SPAK 24 287 - -
Vifa2g05788 700 FunFam Serine/threonine-protein kinase BLUS1 15 103 - -
Vifa2g05788 700 SMART serkin_6 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05788 700 Gene3D Transferase(Phosphotransferase) domain 1 107 337 - -
Vifa2g05788 700 Coils Coil 676 700 - -
Vifa2g05788 700 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 15 695 IPR047173 GO:0043539
Vifa2g05788 700 SUPERFAMILY Protein kinase-like (PK-like) 24 288 IPR011009 -
Vifa2g05788 700 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Vifa2g05788 700 Pfam Protein kinase domain 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05788 700 ProSiteProfiles Protein kinase domain profile. 26 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05788 Vifa-Chr2 1706257073 1706263142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05788 15 682 MAP Kinase Kinase Kinase Kinase AT1G79640 61.718 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vifa2g05788 Pkinase 2.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05788 K08835 - gmx:100780339 1080.09