Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05785 ATGAAGGATAAACATAAATACAAGGATAAGGATAAGGAAAAGGAAATTGAGAAGAAAGAGTATCCTATTGGCGCCAAACATTATGTTATCCACGAAGAGATTGGTCAAGGCGTTAGTGGTTCCGTTTATCGTGCTATTTGTGTTCCTTTCAACGAGATGGTCGCCATCAAGATTCTCGACTTCGAACGTGACAACTGTGATCTGAATAATATATTTCGTGAAGCGCAAACTATGAAACTAGTGGACCATCCTAATTTATTGAAAGCATATTGTTCATTCGTGAGCGATCACAATCTATGGGTTGTGATGCCGTTTATGGCGGGTGGTTCGTGTCTTCATATATTGAAAGCTACACATCTCGAGGGATTTGAAGAGGTTATTATAGCAACCATACTTAGAGAGGTGTTGAAGGGTTTAGAATATCTTCATCATCATGGTCATATTCATCGTGATGTTAAGGCTGGTAATATTTTGATTGATTCTCGTGGTGCCATTAAGCTTGGCGATTTCGGTGCTTCGGCTTGTCTTTTTGATTCTGGTGATCGCCAATGGTCGAGGAATACTTTTGCTGGAACTCCTTGTTGGATGGCACCTGAGGTTATGGAGCAATTGCATGGTTATAACTTCAAAGCTGACATTTGGTCATTTGGCATAACTGCATTAGAGCTTGCCCACGGCCATCCTCCCTTTTCAGAATATCCACCTTTGAAGGTATTGCTTATGACTTTGCAAAATGCACCCCCTCGCCTAGACTACGAAAGTGATTGGAAGTTCTCTAAGTCGTTTAGAAAGATGATTGCTTGTTGTTTGGTTAAAGATCCTTCAAAACGATCATCTGCTAAGTTGTTGTTAAAGCATCCCTTCTTTAAGCAAGCACGTTCCAATGATTATATTTCACGCACACTTTTGGAGGGGATGCCTGCTTTGGGTGCTCGCATGGAGATTCTAAAGGATGCTTTCTCCTACCAATTCATTTCTTCCAAATTAAGAGCCAAATCAAGATCATACCGAGCTTTCCTTTCTACATCATGA 1032 0.407 MKDKHKYKDKDKEKEIEKKEYPIGAKHYVIHEEIGQGVSGSVYRAICVPFNEMVAIKILDFERDNCDLNNIFREAQTMKLVDHPNLLKAYCSFVSDHNLWVVMPFMAGGSCLHILKATHLEGFEEVIIATILREVLKGLEYLHHHGHIHRDVKAGNILIDSRGAIKLGDFGASACLFDSGDRQWSRNTFAGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHPPFSEYPPLKVLLMTLQNAPPRLDYESDWKFSKSFRKMIACCLVKDPSKRSSAKLLLKHPFFKQARSNDYISRTLLEGMPALGARMEILKDAFSYQFISSKLRAKSRSYRAFLSTS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05785 343 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 17 318 IPR047173 GO:0043539
Vifa2g05785 343 Pfam Protein kinase domain 28 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05785 343 ProSiteProfiles Protein kinase domain profile. 28 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05785 343 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Vifa2g05785 343 SUPERFAMILY Protein kinase-like (PK-like) 26 303 IPR011009 -
Vifa2g05785 343 CDD STKc_OSR1_SPAK 26 289 - -
Vifa2g05785 343 Gene3D Transferase(Phosphotransferase) domain 1 109 308 - -
Vifa2g05785 343 FunFam Serine/threonine-protein kinase BLUS1 17 105 - -
Vifa2g05785 343 FunFam serine/threonine-protein kinase BLUS1 isoform X1 109 337 - -
Vifa2g05785 343 Gene3D Phosphorylase Kinase; domain 1 16 105 - -
Vifa2g05785 343 SMART serkin_6 28 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05785 Vifa-Chr2 1705551973 1705553403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05785 16 317 MAP Kinase Kinase Kinase Kinase AT1G79640 78.146 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vifa2g05785 Pkinase 2.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05785 K08835 - fve:101304695 538.495