Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05760 ATGGATTCAAAGAAGTCTAACAAAATAAGAGAGATTGTTAAGCTTCAACAAATCCTCAAGAAGTGGAAAAAAGTTGCTACAAATGCTTCCACTAACAACAACTCGAACTCGAGTAACTCGAGTATTAGTGGTAGTAGTAGCGGTAGTAAAAGTATCAAGTTTTTGAAACGAACTTTATCGTTCAACGATGTTTCGATTTCGAATGTGGACATAGTTCCAAAAGGTTTTCTAGCTGTTTGTGTAGGGAAAGAGCTCAAGAGATTCATTATTCCAATGAATTACTTAAAACACCAAGCATTTGAGGTTTTGCTTCAAGAAGCTGAAGAGGAGTTTGGCTTTCAACAAGAGGGTGTGCTCAAAATTCCATGTCAAGTTTCAATGTTTGAGAAGATATTGAAGGTGGTGGAAGATAAAAATGAAGACTTAAACTTGCATGAGTTTGAATTCAATGGAGACAGAGACATGGTTAGTTGTGATGTTACTCCCACTCATCATGCTCAAGTTTGTAGATGA 513 0.3645 MDSKKSNKIREIVKLQQILKKWKKVATNASTNNNSNSSNSSISGSSSGSKSIKFLKRTLSFNDVSISNVDIVPKGFLAVCVGKELKRFIIPMNYLKHQAFEVLLQEAEEEFGFQQEGVLKIPCQVSMFEKILKVVEDKNEDLNLHEFEFNGDRDMVSCDVTPTHHAQVCR 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05760 170 Pfam Auxin responsive protein 21 134 IPR003676 GO:0009733
Vifa2g05760 170 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 43 131 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05760 Vifa-Chr2 1702773895 1702774407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05760 1 170 Calmodulin-binding Proteins AT2G24400 55.376 6.82e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05760 K14488 - qsu:112034281 214.542