Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05756 ATGGCACATTTCTCAACTAACCTCAAAGTTCTTGCCATTCATCATGACACCATTCTTCTTGATCAAATTCAGCAAATGTGTGACCGCTGTCATTATCTACTAACCAAATGCACTTCACCTTCTGATGCTCTTCATCTTCTTGCGCAAAGAAAACATTATTTTGATATCATGTTGATTGATGTTGGAATGCCAAGCATGGAGTCCTATGAGTTTCTTAGATATATAACCCTACAACACAACATCCCTGTCATTGTCATGTCTTCTGATGAAACAAAAACTTCTGTCATGGAGTCTATAATTCATGGTGCTAGTGATTACTGGCTTCAACCTTTAAATGAAAAACTATTCAAAACTATGTGGCAGCATGCTGCCAGAAAAATTTTAACTGAAAATAAAGAACATGATGTTCTTGGATTCTTGAAGGCTCAAAGTCACAAAGAACCTGAAGTTGTTGGAATCATGAAGGTTCAAAGCCCTAAAGAACATGAAGTTGTTGGATTCTTGGAGGCTCCTCAGCATGAAAGAAAACGGGAGAGAGAAGATGATAATCCTCCAAAAAAGAGTCGGTTATCATGGACGCCGCAATTGCACCAACAGTTTGTTAATGCTGTAAACCAACTTGGCTTGGATGAGGCAAAACCAAGAAAGATTCTGAAAATAATGGATGTTTGTGGTTTAACAACAGCTCAGGTTGCAAGTCATTTGCAGAAGTATAGAGACTATTTGAAGAGAGCACCTTGTGGAAAAAAATCAAAGAAAAGTCCAAGAATTGACACTCCAACGTCAGAAACTGAACATGCTAACTCAAAGGACCAAACTTCTCAATTGAACTCTTTGAATGATAGTAATATTGAAACACAACAACATTTAACTGATGTTGGCAATTATCAAGTTTCCGACACTGGCTACAATTATGAATCACAAAAGCATTCAACAGAAGTCTCTGACATTATGAGCAACGATTTTCCTGATCCATCATCTGACTGGTTCTTAGATTTAGATGATGAGTTATTATCATTATTATTCTGA 1029 0.3693 MAHFSTNLKVLAIHHDTILLDQIQQMCDRCHYLLTKCTSPSDALHLLAQRKHYFDIMLIDVGMPSMESYEFLRYITLQHNIPVIVMSSDETKTSVMESIIHGASDYWLQPLNEKLFKTMWQHAARKILTENKEHDVLGFLKAQSHKEPEVVGIMKVQSPKEHEVVGFLEAPQHERKREREDDNPPKKSRLSWTPQLHQQFVNAVNQLGLDEAKPRKILKIMDVCGLTTAQVASHLQKYRDYLKRAPCGKKSKKSPRIDTPTSETEHANSKDQTSQLNSLNDSNIETQQHLTDVGNYQVSDTGYNYESQKHSTEVSDIMSNDFPDPSSDWFLDLDDELLSLLF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05756 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 243 IPR017930 -
Vifa2g05756 342 MobiDBLite consensus disorder prediction 246 277 - -
Vifa2g05756 342 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 272 IPR045279 GO:0009736
Vifa2g05756 342 MobiDBLite consensus disorder prediction 246 265 - -
Vifa2g05756 342 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Vifa2g05756 342 SUPERFAMILY Homeodomain-like 185 244 IPR009057 -
Vifa2g05756 342 FunFam Two-component response regulator 183 245 - -
Vifa2g05756 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 187 240 IPR006447 GO:0003677
Vifa2g05756 342 Gene3D - 3 130 - -
Vifa2g05756 342 MobiDBLite consensus disorder prediction 168 187 - -
Vifa2g05756 342 CDD REC_typeB_ARR-like 10 124 - -
Vifa2g05756 342 Gene3D - 185 245 - -
Vifa2g05756 342 SUPERFAMILY CheY-like 7 134 IPR011006 -
Vifa2g05756 342 Pfam Response regulator receiver domain 10 114 IPR001789 GO:0000160
Vifa2g05756 342 SMART REC_2 8 119 IPR001789 GO:0000160
Vifa2g05756 342 MobiDBLite consensus disorder prediction 168 192 - -
Vifa2g05756 342 Pfam Myb-like DNA-binding domain 190 239 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05756 Vifa-Chr2 1702546888 1702548098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05756 4 244 Response Regulator Gene Family AT2G25180 33.594 4.28e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa2g05756 Response_reg 3.4e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05756 - K14491 psat:127104423 391.349